Pairwise Alignments

Query, 298 a.a., Heme/copper-type cytochrome/quinol oxidase, subunit 3 from Pseudomonas stutzeri RCH2

Subject, 292 a.a., cytochrome C oxidase subunit III transmembrane protein from Sinorhizobium meliloti 1021

 Score =  228 bits (581), Expect = 1e-64
 Identities = 126/303 (41%), Positives = 167/303 (55%), Gaps = 32/303 (10%)

Query: 2   SQQTTHEQYYVPDQSKWPIIATVALLVTFYGLGSWFNDLKAGRDESSG-----PMIFFVG 56
           + Q  H+ Y++ D S WP++A++   V  +G   +   L  G  +  G     P +FF+G
Sbjct: 4   AHQKQHD-YHIIDPSPWPLLASIGAFVMAFGGVGYMRYLSGGSFKMFGLEFANPWVFFIG 62

Query: 57  ALLIAYMMFGWFGAVVKESRAGLYSAQMDRSFRWGMSWFIFSEVMFFLAFFGALFYIRYW 116
             LI Y MFGW+   +KE+  G ++  +    R+GM  FI SEVMFF A+F A F    +
Sbjct: 63  LALILYTMFGWWSDTIKEAHEGHHTRVVSLHLRYGMIMFIASEVMFFAAWFWAFFDASLF 122

Query: 117 AGPWLAGEGDKGVSNMLWPGFEYSWPLLNNPDPKLYPAPEG--TISAWGLPLINTILLVS 174
            G  +     +    +        WP            P+G   +  W LPL NT++L+ 
Sbjct: 123 PGEAIQAARAEFTGGV--------WP------------PKGIEVLDPWHLPLYNTVILLL 162

Query: 175 SSFTLTWAHHALRKNNRQHLKIGLALTVLLGAAFLILQIEEYVHAYTELGLTLGSGIYGA 234
           S  T TWAHHAL  N+R+ L  GL LTV+LG  F  +Q  EY HA           IYGA
Sbjct: 163 SGTTATWAHHALLHNDRKGLVYGLTLTVMLGVLFSYVQGYEYAHA----PFAFKDSIYGA 218

Query: 235 TFFMLTGFHGAHVTMGAIILTVMLVRILRGHFSPEQHFGFEAAAWYWHFVDVVWIALFVF 294
           TFFM TGFHG HV +G I L V L+R LRG F+P+ HFGFEAAAWYWHFVDVVW+ LF  
Sbjct: 219 TFFMATGFHGFHVLVGTIFLLVCLLRALRGDFTPKHHFGFEAAAWYWHFVDVVWLFLFFS 278

Query: 295 VYV 297
           +Y+
Sbjct: 279 IYI 281



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 77  AGLYSAQMDRSFRWGMSWFIFSEVMFFLAFFGALFYIRYWAG 118
           AG +  Q D        W + + +  F+  FG + Y+RY +G
Sbjct: 2   AGAHQKQHDYHIIDPSPWPLLASIGAFVMAFGGVGYMRYLSG 43