Pairwise Alignments
Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Subject, 1160 a.a., Signal transduction histidine kinase from Pseudomonas fluorescens FW300-N2E2
Score = 196 bits (498), Expect = 7e-54
Identities = 154/518 (29%), Positives = 238/518 (45%), Gaps = 47/518 (9%)
Query: 446 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVR 505
+R + K+EF++ +SHELRTPL + +L +S+E + L+
Sbjct: 481 QRSSKYKSEFLANMSHELRTPLNSSLILSKLLSENPQQNLSEEQVKFAESIYSAGNDLLN 540
Query: 506 LINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSEA 565
LINDILDI K+EAG+L V+ LV+ P D G+ E P+ +
Sbjct: 541 LINDILDISKVEAGKLEVRPENTSVQRLVEGLRDMFEPLAVDKGLEFEVQVLPDAPAMLY 600
Query: 566 TLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFE 625
T D R QV+ NLLSNA+K + G + G + V+D G GI + IFE
Sbjct: 601 T-DRQRLEQVIKNLLSNAVKFTEQGTVSLSVAGQPGSGIAFMVRDSGIGIAADQQQSIFE 659
Query: 626 RFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLPLEEHPQQVQ 685
F QAD + R+ GGTGLGL+I+R L + G I +P QG+ F L +P E + + +
Sbjct: 660 AFRQADGTTNRRYGGTGLGLSISRDLATLLGGSISVSSEPGQGSVFTLVMP-ERYVEPGE 718
Query: 686 APAQPLI----------------------------------HGSAPQQTPLILILEPDSH 711
+P +PL AP T IL++E +
Sbjct: 719 SPIEPLTFIPTATAPAPAAPKAAPAPLIAEVDTPIARFADDRDKAPFDTRCILVIEDEPK 778
Query: 712 AAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDENSVAFLQSLRSQQH 771
A L + H+ GY L+AH A E +L Q A+ L L D + + LQ L+ +
Sbjct: 779 FARILFDLAHELGYQCLVAHGADEGFDLALQLAPDAILLDMRLPDHSGLTVLQRLKERAE 838
Query: 772 YRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVI-RACLQIGGLKPR 830
R +PV ++S++ D + + GA+G + KP + +V R ++ R
Sbjct: 839 TRHIPVHVISVE----DRVEAAMHMGAIG---YAVKPTTREELKDVFARLEAKLTQKVKR 891
Query: 831 ILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLISAQPFDLAIIDLMLPDGDGSEL 890
+L VEDDD R + + I D+E+ +A L+ +D IIDL LPD G++L
Sbjct: 892 VLLVEDDDLQRDSITRLIGDDDIEITAVGLAQQALDLLRTNVYDCMIIDLKLPDMLGNDL 951
Query: 891 FDQLAQS--IPPPPVIIFSALDTPIQDNRLALRQLVKS 926
+++ PPVI+++ + +D LR+ +S
Sbjct: 952 LKRMSSEDICSFPPVIVYTGRNL-TRDEEAELRKYSRS 988
Score = 52.8 bits (125), Expect = 1e-10
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 35 LLQTNRSVSHSLEVITSVQAILTSLQDIETGSRGFILTGDASYLEPYERGLKQLEGYRRS 94
LL + V H+ VI + L D+ETG RG++L GD +LEPYE ++ +
Sbjct: 41 LLSVIQWVGHTDRVINNANEALKLSVDLETGMRGYLLNGDEHFLEPYEVAKPRIAVALDT 100
Query: 95 LEQLVEGRSYPDVRWFRTLDATIAERLQVAAGNVQARRDAGLQAAADHLRDAGGNLLMDR 154
L +L R + A E A G + +R +G +A R G L D
Sbjct: 101 LLELTADNPVQTDR-LHKIQAIQTEWSTYAQGLIDLQRSSGDYRSA--ARSGRGKRLTDE 157
Query: 155 LRALLNAVEQQERRQLAAASSAVTQTT 181
+R + E++ AA + V TT
Sbjct: 158 IRQTFEEIVDTEQQLRAARNQDVRTTT 184
Score = 41.2 bits (95), Expect = 4e-07
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 703 ILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLS----PALDDEN 758
+L+++ D L AL G +I EA + L + L L P +D
Sbjct: 1038 VLLVDDDVRNIFALTSALEAKGAIVVIGRNGLEAIDRLNEFDDIDLVLMDVMMPEMDGFE 1097
Query: 759 SVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVI 818
+ A + R +R LP++ V+ + + D++ L A G D+L KPID R+ +I
Sbjct: 1098 ATALI---RKDPRWRKLPIIAVTAKAMKDDQERCL----AAGSNDYLAKPIDLDRLFSLI 1150
Query: 819 RACL 822
R L
Sbjct: 1151 RVWL 1154
Score = 29.3 bits (64), Expect = 0.002
Identities = 43/214 (20%), Positives = 81/214 (37%), Gaps = 25/214 (11%)
Query: 698 QQTPLILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDE 757
Q+ +L++E D + + + A +A +LL + + + L D
Sbjct: 887 QKVKRVLLVEDDDLQRDSITRLIGDDDIEITAVGLAQQALDLLRTNVYDCMIIDLKLPDM 946
Query: 758 NSVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKP---IDP--- 811
L+ + S+ PV++ + + RDE+ L + +I P +D
Sbjct: 947 LGNDLLKRMSSEDICSFPPVIVYTGRNLTRDEEAELRKYSRSIIIKGARSPERLLDEVTL 1006
Query: 812 ------SRVMEVIRACLQIGGLKPRILHVED----DDDLRVLLAKQIASLDVELAGAAT- 860
SR+ + L+ + ++ DDD+R + A A +E GA
Sbjct: 1007 FLHKVESRLSHERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTSA---LEAKGAIVV 1063
Query: 861 -----LHEARQLISAQPFDLAIIDLMLPDGDGSE 889
L +L DL ++D+M+P+ DG E
Sbjct: 1064 IGRNGLEAIDRLNEFDDIDLVLMDVMMPEMDGFE 1097