Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  158 bits (400), Expect = 1e-42
 Identities = 153/565 (27%), Positives = 267/565 (47%), Gaps = 53/565 (9%)

Query: 416 EHWFQVIKRPLRTSARTCHVVTVAVDVSLRRRME--QMKTEFISTVSHELRTPLTAIRGA 473
           +H        LR +     +  V +D++ +R  E  ++K+EF++ +SHELRTPL    G 
Sbjct: 253 QHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLN---GV 309

Query: 474 LGMLIGGIAGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPL 533
           +G     +  Q+++     L    K++  L+ +INDILD  KLEAG+L       + + +
Sbjct: 310 IGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEV 369

Query: 534 VQQALSDITPYGQDYGVSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGC- 592
           +++ ++       + G+ +     P++       DP R  QV+ NL+ N+IK +  G   
Sbjct: 370 LEEVVNLQATSAHEKGLEITLKIDPKIPRGVVG-DPLRIQQVLTNLVGNSIKFTERGNID 428

Query: 593 VTVDLRR-RGKLLEIG--VQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITR 649
           V+V++R  R  ++++   V+D G GI E  ++++F+ F+QAD+S +R+ GGTGLGL IT+
Sbjct: 429 VSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQ 488

Query: 650 SLVQQMHGKIGFDCQPDQGTRFW--LQLPLEEHPQQVQAPAQPLIHGSAPQQTPLILILE 707
            LV  M G+I    +  QG+ FW  L+L   E P      A  L H         +L++E
Sbjct: 489 KLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRH-------LLLIE 541

Query: 708 PDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDENSVAFLQSLR 767
           P+  AA  + + L Q G       A  E + +   +    L L+P+ +   ++  L   R
Sbjct: 542 PNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHV---YDYVLLNLAPSKETNPTLVELWVQR 598

Query: 768 SQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACL-QIGG 826
           +     ++ V + S +    D+   L++   V  I    KP+   ++++ + A   Q+  
Sbjct: 599 ALAMTHNVIVGVPSTELALADQ---LMQRYPVKCIS---KPLSRKKLLQTLAAQQPQLAN 652

Query: 827 LK---------PRILHVEDDDDLRVLLAKQIASLDVELAGAATL-HEARQLISAQPFDLA 876
                      P  +   DD+   + L   +    VE   + T   EA +   ++ FD+ 
Sbjct: 653 TSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDII 712

Query: 877 IIDLMLPDGDGSELFDQLAQ--SIPPPPVIIFSALDTPIQDNRLALRQLVKSRHDGDELA 934
           ++D+ +P  DG      + Q       PVI  +A     + +R     L+K+  D D L 
Sbjct: 713 LMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDR-----LLKAGMD-DYLT 766

Query: 935 K-----LIQQLLQHWPPGHTHSDEV 954
           K     ++QQ+L HW P HT S +V
Sbjct: 767 KPIEEHILQQVLVHWSP-HTRSKQV 790