Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 785 a.a., aerobic respiration two-component sensor histidine kinase ArcB from Vibrio cholerae E7946 ATCC 55056

 Score =  148 bits (373), Expect = 2e-39
 Identities = 154/593 (25%), Positives = 261/593 (44%), Gaps = 44/593 (7%)

Query: 309 IARDISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLLCNTALSALLDVRPQDI 368
           +  ++ + ++++  L ++   LR  +D   +LI+ R+A+G F  CN A+  L   R  ++
Sbjct: 136 LENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESEL 195

Query: 369 EQRHPDEVPSARLLRPLLLDDDELAALASGSGELRTTEVALTDALGTEHWFQVIKRPL-R 427
               P +V    + + ++  D ++      +    T E  L    G + +F++ K P   
Sbjct: 196 VGLTPWDVYRKEIAQSIVETDQQVF----NNNTAITYEQWLEYPDGRKSFFELRKVPFYN 251

Query: 428 TSARTCHVVTVAVDVSLRRRMEQM-------KTEFISTVSHELRTPLTAIRGALGMLIGG 480
              R   +V    D++ R+R E+        KT FIST+SHELRTPL  I G   ML+  
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLD- 310

Query: 481 IAGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQ--QAL 538
               +S E R  L   + ++  L  + NDI+D++K +  +L       +    V   + L
Sbjct: 311 --TPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVL 368

Query: 539 SDITPYGQDYGVSLEFL-DAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGG---CVT 594
           + +    +     LE L D P L   ++T    R  QV+ NLLSNA+K +  GG    V+
Sbjct: 369 AALMAEQKGLRFDLERLTDLPSLVEVDST----RLRQVLWNLLSNAMKFTKEGGVVMTVS 424

Query: 595 VDLRRRGKLLEIGVQDRGPGIPEAFRSRIFERFAQADS-SDARQRGGTGLGLAITRSLVQ 653
            +   +   + I V+D G GIPEA + +IF  + Q  S  D     GTG+GLA++R L++
Sbjct: 425 AECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLIK 484

Query: 654 QMHGKIGFDCQPDQGTRFWLQLPLEEHPQQVQAPAQPLIHGSAPQQTPLILILEPDSHAA 713
            M G I  + +   G+ F + + +   P   +AP +  I    PQ    I ++E      
Sbjct: 485 LMGGDISVNSEEGFGSTFTVTIRV---PLLAEAPIE--IEPQEPQTELNIFMVEDIELNI 539

Query: 714 EQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDENSVAFLQSLRSQQHYR 773
                 L   G+   +A    EA +         + L   L D          R+  HY 
Sbjct: 540 TVARSLLESMGHKVTVAMTGEEAIQGFNPTEYDLVFLDIQLPDMTGFDIAHYYRT--HYS 597

Query: 774 SLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACLQ------IGGL 827
           SLP L+       +D+++   +G    +     KP+  + V EVI    Q      +  +
Sbjct: 598 SLPPLVALTANVLKDKEEYRQKGMDAAI----SKPLSVAAVREVIAKMTQHHAGESVAKV 653

Query: 828 KPRILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLI-SAQPFDLAIID 879
           K        DD  + LL  ++    VE+ G+  + ++  L   + P  LA++D
Sbjct: 654 KSNKEKELPDDLYQQLLDLEMLQSYVEIVGSQPVIDSVHLFEQSMPAYLAVLD 706



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 28/138 (20%), Positives = 63/138 (45%), Gaps = 7/138 (5%)

Query: 813 RVMEVIRACLQIGGLKPRI---LHVEDDDDLRVLLAKQIA-SLDVELAGAATLHEARQLI 868
           RV  +  A ++I   +P+    + + +D +L + +A+ +  S+  ++  A T  EA Q  
Sbjct: 507 RVPLLAEAPIEIEPQEPQTELNIFMVEDIELNITVARSLLESMGHKVTVAMTGEEAIQGF 566

Query: 869 SAQPFDLAIIDLMLPDGDGSEL---FDQLAQSIPPPPVIIFSALDTPIQDNRLALRQLVK 925
           +   +DL  +D+ LPD  G ++   +     S+PP   +  + L    +  +  +   + 
Sbjct: 567 NPTEYDLVFLDIQLPDMTGFDIAHYYRTHYSSLPPLVALTANVLKDKEEYRQKGMDAAIS 626

Query: 926 SRHDGDELAKLIQQLLQH 943
                  + ++I ++ QH
Sbjct: 627 KPLSVAAVREVIAKMTQH 644