Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (370), Expect = 6e-39
 Identities = 148/625 (23%), Positives = 271/625 (43%), Gaps = 61/625 (9%)

Query: 305  DHLAIARDIS---ELQRSRD-SLHDQQLFLRRVVDTDDNLIFVRDAQGRFLLCNTALSAL 360
            D L++A  +S   E QR  +  + +Q    + ++D   N ++   A G+FL  N     L
Sbjct: 445  DDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDL 504

Query: 361  LDVRPQDIEQRHPDEVPSARLLRPLLLDDDELAALASGSGELRTTEVALTDALGTEHWFQ 420
            + +   ++  + P E+  A +          L    S     +  EV+L D  G +    
Sbjct: 505  MGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSS----QNYEVSLVDYTGVQREML 560

Query: 421  VIKRPLRTSARTCH-VVTVAVDVSLRRRME--------------QMKTEFISTVSHELRT 465
            V +      A   + +V + +D++ R+ ME              Q K +F++ +SHE+RT
Sbjct: 561  VYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRT 620

Query: 466  PLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNF 525
            P+ AI   LGM    +   +    R  +   +++++ L+ +INDILD  K+EAG+L    
Sbjct: 621  PMNAI---LGMAHLALNTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVER 677

Query: 526  GRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIK 585
               ++  ++    + ++   Q+ G+    +D           DP R  QVM NL  NA+K
Sbjct: 678  IDFNLDDVLDNVTAVVSLKAQEKGIEF-LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVK 736

Query: 586  HSPAGGCV----TVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGT 641
             +  G  V       L  +   L   V+D G GI +     +F+ F+QAD+S  RQ GGT
Sbjct: 737  FTSQGEIVLSARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGT 796

Query: 642  GLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLPLEEHPQQVQAPAQPLIHGSAPQQTP 701
            GLGL+I++ LV+ M G+I    +  +G+ F   +       +++  +QP +HG A ++  
Sbjct: 797  GLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRDISQP-VHGLADKR-- 853

Query: 702  LILILEPDSHAAEQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDENSVA 761
             +L+++ +  A   L   L    +  +      EA   + Q     L +   +   N + 
Sbjct: 854  -VLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIE 912

Query: 762  FL---QSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVI 818
             L   ++L  + H +S  V     +     E+  L+    V       KP++PS +++ I
Sbjct: 913  LLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKLVDALIV-------KPVNPSNLLDAI 965

Query: 819  RACLQIGGLKPR----------------ILHVEDDDDLRVLLAKQIASLDVELAGAATLH 862
                 I  ++ +                +L VED++  + +    +    + +  A    
Sbjct: 966  VTSYGIEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQ 1025

Query: 863  EARQLISAQPFDLAIIDLMLPDGDG 887
            EA + +    FDL ++D+ +P  DG
Sbjct: 1026 EALERLEHADFDLVLMDMQMPVMDG 1050



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 693  HGSAPQQTPLILILEPDSHAAEQLAEALHQH-GYATLIAHAAAEARELLGQHRVQALTLS 751
            H S P      L+L  D+   +++A  L Q  G   ++A+   EA E L       + + 
Sbjct: 983  HNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMD 1042

Query: 752  PALDDENSVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDP 811
              +   + +   + +R+   + SLP++ ++      D +  L      G+ D L KPI+ 
Sbjct: 1043 MQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCL----QAGMNDHLSKPIEV 1098

Query: 812  SRVMEVIRACLQI 824
             +  +V+R  LQ+
Sbjct: 1099 DKFYQVLRHFLQV 1111



 Score = 35.8 bits (81), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 830 RILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLISAQPFDLAIIDLMLPDGDGSE 889
           R+L V+D+D  R +L   + ++   +   +   EA   I  +PFD+  +D  +P  +G E
Sbjct: 853 RVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIE 912

Query: 890 LFDQL 894
           L  ++
Sbjct: 913 LLTRV 917