Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  152 bits (384), Expect = 2e-40
 Identities = 171/653 (26%), Positives = 291/653 (44%), Gaps = 66/653 (10%)

Query: 312  DISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLLCNTALSALLDVRPQDI--- 368
            DISE ++    L  ++   R + D     I   D +G  L CN   S  L +  + +   
Sbjct: 888  DISERKQMDRELAKREAHFRALFDNAGIGIVNVDDRGVILDCNEQFSQYLQLPIERLKGS 947

Query: 369  ---EQRHPDEVPSARLLRPLLLDDDELAA-----LASGSGELRTTEVALT---DALGTEH 417
               + + P++   A+     L+ D   +      L + +GE R  +V +T   D  G   
Sbjct: 948  LFFDYQDPEQGLEAKNSFKHLMGDGADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYR 1007

Query: 418  WFQVIKRPLRTSARTCHVVTVAVDVSLRRRMEQMKTEFISTVSHELRTPLTAIRGALGML 477
               +    + +       +T A DV+      + K++F++ +SHE+RTP+ AI   +GM 
Sbjct: 1008 SAVLSMADISSLKLLSEELTQAKDVA--DAASKAKSDFLANMSHEIRTPMNAI---IGMS 1062

Query: 478  IGGIAGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQQA 537
               +   +  + +  +    + S+ L+ +INDILD  K+EAG+L        +  +++  
Sbjct: 1063 QLCLQTSLDKKQQNYVEKIDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDL 1122

Query: 538  LSDITPYGQDYGVSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGCVTV-- 595
                +    D  + L F  AP +       DP R +QV+ NL++NAIK +  G  +    
Sbjct: 1123 SDMFSVKAADKQLELLFAVAPNIPR-HLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSIS 1181

Query: 596  DLRRRGK--LLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQ 653
             L R  +  LL+  V+D G G+ E  R ++F+ F+QADSS  R+ GGTGLGLAI + LV+
Sbjct: 1182 QLVREDEEILLKFSVRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVE 1241

Query: 654  QMHGKIGFDCQPDQGTRFWLQLPLEEHPQQVQAPAQPLIHGSAPQQTPLILILEPDSHAA 713
             M G+IG + Q   G+ F+  +  +    Q+   AQ L       +   IL+ + ++ A 
Sbjct: 1242 LMGGEIGVESQFGNGSTFFFSVRFKVADNQLIKVAQEL-------EGMRILVADDNATAR 1294

Query: 714  EQLAEALHQHGYATLIAHAAAEARELLGQHRVQALTLSPALDDEN--SVAFLQSLRSQQH 771
            + L   L   G+      + AEA       R Q      AL D     +  L++ R    
Sbjct: 1295 DILRSTLESMGFTVDTVRSGAEALS-----RCQETDYGVALIDWRMPEMDGLETARRLLS 1349

Query: 772  YRSLP--VLIVSLQPQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACLQIGGLKP 829
             R+ P   LIVS       + D + +     +  ++ KPI  SR+++ I + L   G  P
Sbjct: 1350 ERTNPPKTLIVSAHA----DGDFIDKAEQAEISGYITKPISASRLLDGIMSALGKQGAMP 1405

Query: 830  -------------------RILHVEDDDDLRVLLAKQIASLDVELAGAATLHEARQLISA 870
                               RIL VED++  + + ++ +  + V L+ A     A + ++ 
Sbjct: 1406 VRRKGSEVSPALLAQLKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLAM 1465

Query: 871  QPFDLAIIDLMLPDGDGSELFDQLAQ--SIPPPPVIIFSALDTPIQDNRLALR 921
            Q FDL ++D  +P  DG +   +L +   +   PVI  +A +    D  + LR
Sbjct: 1466 QSFDLVLMDCQMPVMDGYQATAELRKRPELADLPVIAMTA-NAMAGDKEMCLR 1517