Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  179 bits (454), Expect = 8e-49
 Identities = 121/399 (30%), Positives = 192/399 (48%), Gaps = 32/399 (8%)

Query: 446 RRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVR 505
           R ++++KT+F + +SHELRTPLT I G +G  +      ++   R  L +  +N+  L R
Sbjct: 209 RELDELKTQFFANISHELRTPLTLILGPVGKHLAD--PDLAPALRRDLEVVERNARMLYR 266

Query: 506 LINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSEA 565
            +ND+LD+ KLEAGR+  ++   D+  L +   S      +   V       P+LT   A
Sbjct: 267 HVNDLLDVAKLEAGRMVMHYTEGDLAHLTRVIASHFDSLAEGRRVRYVVTTPPDLT---A 323

Query: 566 TLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFE 625
            +D +++ +++ NLLSNA K +  GG + + L   G    I V+D GPGIPEA R ++FE
Sbjct: 324 QVDAEKYQRILLNLLSNAFKFAGDGGAIQLRLTAAGGQARIEVEDNGPGIPEAMREQVFE 383

Query: 626 RFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLPLEEHP-QQV 684
            F Q +   +R  GGTGLGLAI R L Q   G +  D  P  G  F L+LPL   P  Q+
Sbjct: 384 PFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRIDAAPSSGALFTLELPLLAPPGTQL 443

Query: 685 QAPAQPL---------------------IHGSAPQQTPLILILEPDSHAAEQLAEALHQH 723
           QA  + L                       G A    PL+L++E +      + EAL +H
Sbjct: 444 QAQGEALPGDLSRQALEELQPPPALPEHRQGRADAALPLVLVVEDNPDMNAFICEALGRH 503

Query: 724 GYATLIAHAAAEARELLGQHRVQALTLSPALDDENSVAFLQSLRSQQHYRSLPVLIVSLQ 783
            Y    A    E  E+  +     +     +   +    +Q+LR +     +PV+I++  
Sbjct: 504 -YRVASARDGQEGLEMACRQTPDLIVSDVMMPRLSGDRMVQALRQEPALAGVPVVILT-- 560

Query: 784 PQRRDEDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACL 822
              + ++D  +R     V D+L+KP     ++  + + L
Sbjct: 561 --AKADEDLRIRLLQDSVQDFLNKPFSVEELLARVSSLL 597



 Score = 73.6 bits (179), Expect = 6e-17
 Identities = 115/527 (21%), Positives = 196/527 (37%), Gaps = 79/527 (14%)

Query: 213 RQQLAGAAQAGEARLGALLQAIPDYLYAVDHQQQVSSLAAGTARRAPPPAAIEPLLHDLL 272
           R     +A+ G+  L    +  PD + +     ++S      A R  P  A  P++  +L
Sbjct: 502 RHYRVASARDGQEGLEMACRQTPDLIVSDVMMPRLSGDRMVQALRQEPALAGVPVV--IL 559

Query: 273 QQREDSGLRQTTWCELQTRRTFEVRLMPTGLGDHLAIARDISELQRSRDSLHDQQLFLRR 332
             + D  LR              +RL+   + D L     + EL     SL  ++L    
Sbjct: 560 TAKADEDLR--------------IRLLQDSVQDFLNKPFSVEELLARVSSLLTERLQAAD 605

Query: 333 VVDTDDNLIFVRDAQ-----------GRFLLCNTALSALLDVRPQDI------EQRHPDE 375
           ++   +       +Q           GR+LL N  L  ++    +++      E  HPD+
Sbjct: 606 LLRQSEKRFRATFSQAAVGMAHVAPDGRWLLVNQRLCDIIGYPREELLGRTFQEITHPDD 665

Query: 376 VPSARLLRPLLLDDDELAALASGSGELRTTEVALTDALGTEHWFQVIKRPLRTSARTCHV 435
           + S         D +++  L +G  +    E       G   W  +    +R +  +   
Sbjct: 666 LYS---------DLEQMHRLLAGEIDSYAMEKRYRHRDGHLVWINLTVSLVRAADGSPEY 716

Query: 436 VTVAVD----------------VSLRRRMEQMKTE----------FISTVSHELRTPLTA 469
              AV+                  L RR+E+   E          F   VSH+LR PL A
Sbjct: 717 FIAAVEDIQRRKEAEGEIHRLNADLERRVEERTAELRAANRELDSFAHAVSHDLRAPLRA 776

Query: 470 IRGALGMLIGGIAGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHD 529
           I G    +I      +  EAR  L     + +++  LI  +L + +  + R        D
Sbjct: 777 ITGFSRAIIEDHGTALPAEAREFLDHIIASGQQMGALIEGLLTLSR--SSREELRRDDID 834

Query: 530 VRPLVQQALSDITPYGQDYGVSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSP- 588
           +  L ++ L ++      + V+ +  D        A  D      V+ NLL NA K++  
Sbjct: 835 LSALARRILEELARSEPGHRVAWQVEDG-----LVARGDIRMIGVVLRNLLGNAWKYTAR 889

Query: 589 -AGGCVTVDLRRRGKLLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAI 647
            A   + V  RR+ K ++  + D G G   A   ++F+ F +    D  +  G G+GLA 
Sbjct: 890 TAAPLIRVHARRQEKQIQFCIADNGAGFDMAQVGKLFQPFQRLHRQD--EFPGIGIGLAT 947

Query: 648 TRSLVQQMHGKIGFDCQPDQGTRFWLQLPLEEHPQQVQAPAQPLIHG 694
            + +V +  G I    +   G  F   LPL E+     AP+ P   G
Sbjct: 948 VQRVVHRHGGSIEARGEAGHGASFCFTLPLPENEPAPPAPSTPAAPG 994