Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  166 bits (420), Expect = 9e-45
 Identities = 181/689 (26%), Positives = 298/689 (43%), Gaps = 70/689 (10%)

Query: 281  RQTTWCELQTRRTFEVRLMPTGLGDHLAIARDIS----ELQRSRDSLHDQQLFLRRVVDT 336
            R+T W E+      +  +  T     L +   +     EL  +R+    Q + L+ ++D+
Sbjct: 391  RRTGWREIDRLAAAQEHMRETLQDATLRLEERVEQRTRELADAREESSRQLVLLQAIMDS 450

Query: 337  DDNLIFVRDAQGRFLLCNTALSALLDVRPQDIEQRHPDEVPSARLLRPLLLDDDELAALA 396
              N +F +DA+GRFL CN A      V    I  +   E+P         L     A + 
Sbjct: 451  MPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVRELPFLSEEEKQELQAVSEAIIR 510

Query: 397  SGSGELRTTEVALTDAL--GTEHWFQVIKRPLRTSARTCHVVTVAVDVSLRRRMEQ---- 450
             G    R  ++   D L   T +W     R   T      +V V VD+S R+ ME+    
Sbjct: 511  DGIMMHRELQLPFADGLRHDTLYWANGFSREDGTPGG---MVGVVVDISERKLMEEELRR 567

Query: 451  ----------MKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQVSDEARPLLGIAHKNS 500
                       K+ F++ +SHE+RTP+ AI   +GM    +  +++ + R  +G  H  +
Sbjct: 568  ARATAEEATEAKSLFLANMSHEIRTPMNAI---IGMAHLAMKTELTPKQRDYVGKIHNAA 624

Query: 501  ERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDITPYGQDYGVSLEFLDAPEL 560
              L+ +INDILD  K+EAG+L+  +    +  ++      +     + G+ L F +    
Sbjct: 625  ISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLF-NVNAG 683

Query: 561  TSSEATLDPDRFAQVMANLLSNAIKHSPAGGCVT----VDLRRRGKLLEIGVQDRGPGIP 616
            T +    DP R  Q++ NL+SNAIK +  G        VD       L+  ++D G G+ 
Sbjct: 684  TPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMS 743

Query: 617  EAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGFDCQPDQGTRFWLQLP 676
                  +F+ F QAD S  R+ GGTGLGL+I+R LV+ M G I  D    +G+ F     
Sbjct: 744  REQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAW 803

Query: 677  LEEHPQQVQAPAQPLIHGSAPQQTPLILILEPDSHAAEQLAEAL-HQHGYATLI---AHA 732
                 +  +    P     A      +L+ + +  A E L EAL H      L+   A A
Sbjct: 804  FGRAEELARPRTLP-----ASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEA 858

Query: 733  AAEARELLG---QHRVQALTLS-PALDDENSVAFLQSLRSQQHYRSLPVLIVSLQPQRRD 788
             A+  E+ G    +RV  L    P LD  +++  LQ    Q  +  + ++    Q + R 
Sbjct: 859  LAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRR 918

Query: 789  EDDGLLRGGAVGVIDWLHKPIDPSRVMEVIRACLQIGGLKPRILHVEDD----DDLRVLL 844
            + + L      G+   L KP+  S + +V+ + +         LH+       D +R+LL
Sbjct: 919  QTENL------GICGILVKPVSASTLFDVLVSLVDADNAPATPLHIAAPQTRIDGMRILL 972

Query: 845  A------KQIA-----SLDVELAGAATLHEARQLISAQP---FDLAIIDLMLPDGDGSEL 890
            A      +QIA     S+  ++  A    +A +L+   P   FDL ++DL +P  DG + 
Sbjct: 973  AEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDA 1032

Query: 891  FDQL--AQSIPPPPVIIFSALDTPIQDNR 917
             ++L   Q     P++  +A   P +  R
Sbjct: 1033 TERLRCQQRFAHLPILAMTAHAMPEERER 1061



 Score = 43.9 bits (102), Expect = 7e-08
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 686  APAQPLIHGSAPQQT--PLILILEPDSHAAEQLA-EALHQHGYATLIAHAAAEARELLGQ 742
            APA PL H +APQ     + ++L  D+   +Q+A E L   G    +A    +A ELL +
Sbjct: 951  APATPL-HIAAPQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLER 1009

Query: 743  HRVQALTL------SPALDDENSVAFLQSLRSQQHYRSLPVLIVSLQPQRRDEDDGLLRG 796
                +  L       P LD  ++    + LR QQ +  LP+L ++      + +  L   
Sbjct: 1010 SPDDSFDLVLMDLQMPHLDGYDAT---ERLRCQQRFAHLPILAMTAHAMPEERERCL--- 1063

Query: 797  GAVGVIDWLHKPIDPS 812
             A+G+ D L KPIDP+
Sbjct: 1064 -AIGMNDHLAKPIDPT 1078