Pairwise Alignments

Query, 956 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  156 bits (395), Expect = 4e-42
 Identities = 97/321 (30%), Positives = 169/321 (52%), Gaps = 23/321 (7%)

Query: 363 VRPQDIEQRHPDEVPSARLLRPLLLD-DDELAALASGSGELRTTEVALTDALGTEHWFQV 421
           ++P +  ++  + V + R  + +++D DDE   LA    ++  T++ ++D          
Sbjct: 341 IKPLEQLKQGAEWVSNGRYDQKVIVDSDDEFGELAKAFNKM-ATQINISD--------DK 391

Query: 422 IKRPLRTSARTCHVVTVAVDVSLRRRMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGI 481
           +K+         H   + +  +  + ++++K+E I+ VSHELRTPLT+I+G + +++ G 
Sbjct: 392 LKK---------HAEELKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGT 442

Query: 482 AGQVSDEARPLLGIAHKNSERLVRLINDILDIEKLEAGRLTFNFGRHDVRPLVQQALSDI 541
            G ++D  +  L +A  N  RL RLI  +LD+ K+E G L     + ++R +V   +  +
Sbjct: 443 MGAINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYL 502

Query: 542 TPYGQDYGVSLEFLDAPELTSSEATLDPDRFAQVMANLLSNAIKHSPAGGCVTVDLRRRG 601
            P   +  + L      E+       D DR  QV+ NL+ NAIK SPA   + V      
Sbjct: 503 KPLATEKNIKLN----KEVEDIAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLED 558

Query: 602 KLLEIGVQDRGPGIPEAFRSRIFERFAQADSSDARQRGGTGLGLAITRSLVQQMHGKIGF 661
           + + + V DRG GIP+    +IF RF Q DSS  R++GG+GLGLA+ +S+V+   G I  
Sbjct: 559 EHIHLKVTDRGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWV 618

Query: 662 DCQPDQGTRFWLQLPLEEHPQ 682
           + +  +G+ F + LP+    Q
Sbjct: 619 ESELGKGSTFHIILPISAKDQ 639