Pairwise Alignments

Query, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1430 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  157 bits (397), Expect = 4e-42
 Identities = 180/673 (26%), Positives = 279/673 (41%), Gaps = 74/673 (10%)

Query: 170 HLLAHRYAEQAALQQAMLDSASSAVLVTRPDGVVTSVNPTAERMLGHSEQELVGHQLTSA 229
           H+ A   AE+  L+ +++      V +  P G+  + N   E + GH E E+VG      
Sbjct: 275 HMQAALEAERQHLK-SLIQGMPDLVWLKDPAGIYLACNSRFESLFGHREAEIVGRTDYDF 333

Query: 230 LFRREA-----LQRRATLLANELQTPIEPDFAVLTAPLHRGRREMSEWRLRHRSGADVPV 284
           + R  A       RRA  L +  +     ++ V  A  HR   E  +  +  R G  + V
Sbjct: 334 VGRELADFFRDNDRRAMALGHASRNE---EWLVFAADGHRELVETIKTPIYDRDGVVLGV 390

Query: 285 LV---GVTAIHDEQEELRGYLVNAYDLAYQEQLQLRLQQIAAQVPGMLFQFHWRPDGASC 341
           L     +T +H  QE LR           Q +  L+  Q  A++        W+ D  + 
Sbjct: 391 LGVARDITPLHQSQETLR-----------QSEAALKRTQTVARIGS------WKIDIPAN 433

Query: 342 FPYVSEGVEQIYGLSPGQLAGSFAPIIARVYALDRSALLGSIREAAAELAPWHIEHRVEH 401
             + SE    + G+ P      F   +A+V+  DR A + S   AA E A + IEHR+  
Sbjct: 434 LLHWSEEAHHLLGV-PWDHGVGFDEFLAQVHGDDR-AWVRSAWLAALEGAEFDIEHRMVV 491

Query: 402 PRKGLIWVEARAT-PLQQVDGSVLWHGFVTDITVRKAEQLELERQQEMNRRLLEALSEAV 460
               + WV  RA     +    +   G V DIT  K     L++++++ R +    +  +
Sbjct: 492 DGT-VKWVRQRAELEFDEAGKPLRGIGMVQDITAIKDASETLKQREKIFRSITNQAAIGI 550

Query: 461 IACDADG------------CLTLFNEKAKQWHGTDVAPV--------------PPDEWPT 494
           +  DA+             CL    E+  +    D+  V                 E   
Sbjct: 551 VLIDAETMTFAEFNDAACECLGYTREEFAKLSVYDIQGVHDRAGVDARRAQILAQREAAF 610

Query: 495 RYQLYHPDGVTPLRPEEIPLLRALHGEHVCDHEMVLLGQGEP--RHVLSNADPLYTSDGQ 552
             Q  H DG        + +LR L+G          + + +   R +L   + L      
Sbjct: 611 ENQRRHKDGSLRDFWVTVKVLR-LNGRDYLSSVWTDITEAKENERALLRYQNQLEELVAA 669

Query: 553 PMGAVAVLHDITERKRIERLQREFISTVSHELRTPLTSITGALGLICSNVMGEVPEAMHE 612
               +A   +  E     R +  F++ +SHE+RTP+ +I G   LI  ++     E   +
Sbjct: 670 RTAELAAAKEAAEAAN--RSKSSFLANMSHEIRTPMNAIIGLTHLIRRDI---ATERQRQ 724

Query: 613 LLDIAQQNSQRLNALIDDLLDMDKLHAGKMRFALLRQPLQPQLELALRSNRNYAEQHG-- 670
            LD     +  L  +I+D+LD  K+ AGKM        +   +          AE  G  
Sbjct: 725 QLDKVSNAAHHLLGIINDILDFSKIEAGKMSLEPTDFEVDRVIHNVCTLVAEKAEAKGLE 784

Query: 671 VVLQLGACPAVTVEIDAMRLQQVLSNLLSNAAKFSPAGEQVELSATLSDGR----VRISV 726
           VV+ +   P   +  D +RL QVL N + NA KF+  G  V              VR+ V
Sbjct: 785 VVVDIARLPPA-LHGDGLRLGQVLLNFVGNAVKFTERGSVVVRGYVARQEADSLWVRLEV 843

Query: 727 RDRGPGISADFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIERMGGQIGFESEPGHG 786
            D G G+S + ++ +FQ F QAD S +RQ GGTGLGLAIS+ L E MGG++G +SE G G
Sbjct: 844 ADTGIGLSREQQQCLFQAFTQADVSTTRQYGGTGLGLAISRRLAEMMGGRVGVDSESGKG 903

Query: 787 ACFWFELPSEGLA 799
           + FW E P   +A
Sbjct: 904 STFWIEAPFGSVA 916



 Score = 27.3 bits (59), Expect = 0.006
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 395 IEHRVEHPRKGLIWVEARATPLQQVDGSVLWHGFVTDITVRKAEQLELERQQEMNRRLLE 454
           +EH    P  GL+   A+A              F   +  R   Q  LE +++  + L++
Sbjct: 244 VEHLSRMPGGGLLTDMAKAVL-----------AFREAVVARGHMQAALEAERQHLKSLIQ 292

Query: 455 ALSEAVIACDADGCLTLFNEKAKQWHGTDVAPVPPDEWPTRYQLYHPDGVTPLRPEEIPL 514
            + + V   D  G     N + +   G   A +      T Y     +     R  +   
Sbjct: 293 GMPDLVWLKDPAGIYLACNSRFESLFGHREAEIVGR---TDYDFVGRELADFFRDND--- 346

Query: 515 LRALHGEHVCDHE--MVLLGQGEPRHVLSNADPLYTSDGQPMGAVAVLHDITERKRIERL 572
            RA+   H   +E  +V    G    V +   P+Y  DG  +G + V  DIT   + +  
Sbjct: 347 RRAMALGHASRNEEWLVFAADGHRELVETIKTPIYDRDGVVLGVLGVARDITPLHQSQET 406

Query: 573 QRE 575
            R+
Sbjct: 407 LRQ 409