Pairwise Alignments

Query, 300 a.a., ABC-type spermidine/putrescine transport system, permease component II from Pseudomonas stutzeri RCH2

Subject, 256 a.a., spermidine/putrescine ABC transporter permease PotC from Vibrio cholerae E7946 ATCC 55056

 Score =  199 bits (505), Expect = 7e-56
 Identities = 104/259 (40%), Positives = 164/259 (63%), Gaps = 12/259 (4%)

Query: 3   RWSFSNLILVLGLLFIYLPMVILVIYSFNASRLVTVWGGWSLKWYAGLLDNSQLMGAVMR 62
           R+SF +L+     LF+YLP+++L+  SFN ++    WGG++ KWY  L++N  LM A   
Sbjct: 6   RFSFMSLVY----LFLYLPIIVLIANSFNENKFGIKWGGFTTKWYHALMNNDSLMQAAWH 61

Query: 63  SLEVAAYTAVAAVALGTMAAFVLTRIPVFRGRTLFGGLVTAPLVMPEVITGLSLLLLFVA 122
           S+ VA ++A AA  +G++ A  L R   F+G+ +  G++   ++ P+++  +SLL LF+ 
Sbjct: 62  SINVAVFSATAATLIGSLTAVALFRYQ-FKGKKVVSGMLFVVMMSPDIVMAISLLALFLV 120

Query: 123 MAQLVGWPAQRGLVTIWIAHTTFCSAYVAVVVMARLRELDLSIEEAAMDLGARPWKVFFL 182
           M       A+ G  T+ IAH TFC  +V V V  RL   D+ + EAA DLGA  W +   
Sbjct: 121 MG------AKLGFFTLLIAHITFCLPFVVVTVYTRLNGFDVKMLEAAKDLGAGEWVILKK 174

Query: 183 ITMPMIAPSLAAGGMLSFALSLDDLVLASFVSGPGSTTLPMEIFSAVRLGVKPEINAVAS 242
           I +P+  P++AAG +LSF LSLDD++++SFV+GP    LP++I+S V++G+ PE+NA+A+
Sbjct: 175 IILPLAKPAVAAGWLLSFTLSLDDVIISSFVTGPTYEILPLKIYSMVKVGISPEVNALAT 234

Query: 243 LILLSVSLATFLAWYLTRR 261
            ++L VSL   +A  L  R
Sbjct: 235 -VMLVVSLVLVVASQLLAR 252