Pairwise Alignments

Query, 684 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  464 bits (1194), Expect = e-135
 Identities = 272/685 (39%), Positives = 390/685 (56%), Gaps = 34/685 (4%)

Query: 10  FTLSLEGIEHDFKVLE-LQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59
           F L ++G+E +  V+   +G+E++S           +R+ ++L S  S+L  E  + + A
Sbjct: 6   FQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVDQTA 65

Query: 60  FLALAPVGS---GIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRINQRIFQHLTVPQ 116
            L +   G     I+G+V Q ++G++G R T Y LTLVP L  L+ R N RIFQ  +VP+
Sbjct: 66  HLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPE 125

Query: 117 IIAQVLEEHGIQADAYRFQLGPVIYPAREYCVQYDETDLHFIQRLCEEEGIHYHFQHGAS 176
           II+ +L+E GI+  A+  +        RE+CVQY ETDL F+ R+  EEG+ Y   H A 
Sbjct: 126 IISILLQEMGIEDYAFALKRECA---QREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQ 182

Query: 177 GHVLVFGDDQTVFARLAATA-YQQDSGLVADQPVIKRFGLRLETRPSHVTRRDYDFEKPR 235
            H L+F D      +LA    Y   +G   + P +     +   + SH   +DY F+KP 
Sbjct: 183 KHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPA 242

Query: 236 LSMEAAFHSDF----QPDLEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPQ 291
                          QP+ E +D PGR+ + A GK  SQ  LE  R D  LA+ +SD+P 
Sbjct: 243 YGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPL 302

Query: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSDSQSRDGFTQGYRNHFTA 351
           L +G    L +H     N+ WL+ +  H+G QPQ L+E   S + +       Y N    
Sbjct: 303 LLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT-------YSNQLKL 355

Query: 352 TPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411
            P  I +R A    KP+V G   A V GP GEEI+CD +GRV+V F WDR   +++K+SC
Sbjct: 356 IPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSC 414

Query: 412 WLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTR 471
           W+RV+  WAG +YG +AIPRVG EV+V+FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 415 WVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTK 474

Query: 472 TVLKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKVRVGHERHDTVDANS 531
           TVL+T  +  G GYNEL  ED+ G EQI +HAQ+DWD  IEHD    + H++H TVD + 
Sbjct: 475 TVLRT-ETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDR 533

Query: 532 YSEYRAEEHRTTHADRKTEIRANDHLTVGNSQQLKIGTGQFVEAGQEIHLSSGLKVVLEA 591
           ++  +  +H T   + +++I  +    VG S Q K+G    VEAG+EI L SG K+V+EA
Sbjct: 534 FTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQRIAVEAGKEISLKSGAKIVVEA 593

Query: 592 GSELTFKAGGSFIKLDASGITMVGPLIRMNSGGSPGNGSGAAPILPGQVKAADADVPGIS 651
           G+ELT KAGGSF+K+DA G+ +VGP I +N+GGS G+GS       GQ+ AA   +    
Sbjct: 594 GAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYG----GQLAAAPRMLAQAK 649

Query: 652 LEALVKQNMLFRSTRTGVCEVCEAA 676
             A + Q  +  S ++G   V + A
Sbjct: 650 PVAELVQPDIAASMQSGAARVIDVA 674