Pairwise Alignments

Query, 684 a.a., Rhs element Vgr protein from Pseudomonas stutzeri RCH2

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  455 bits (1171), Expect = e-132
 Identities = 263/671 (39%), Positives = 388/671 (57%), Gaps = 35/671 (5%)

Query: 10  FTLSLEGIEHDFKVLE-LQGREAISQP---------YRFDLELVSERSDLDLESLLHRPA 59
           +++ +EG+E +  V+    G+E++S           +R++++L S  S+L  E ++ + A
Sbjct: 6   YSIEVEGLEDETLVVRGFHGQESLSNSVFLGQACYGFRYEVQLASRVSNLTAEQMVDKRA 65

Query: 60  FLAL---APVGSGIHGLVHQAAQGESGQRLTRYRLTLVPQLAYLAHRINQRIFQHLTVPQ 116
            L L   + +   +HG+V   +QG+ G   T Y+LTLVP L  L+ R N RIFQ  TVP+
Sbjct: 66  ELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLTLVPALERLSLRHNSRIFQKQTVPE 125

Query: 117 IIAQVLEEHGIQADAYRFQLGPVIYPAREYCVQYDETDLHFIQRLCEEEGIHYHFQHGAS 176
           I++ +L+E GI   A+  +   V    RE+CVQY E+D+ F+ RL  EEG+ Y F H A 
Sbjct: 126 ILSILLQEMGINDYAFALKRDGV---QREFCVQYRESDIDFLHRLAAEEGLVYSFVHEAG 182

Query: 177 GHVLVFGDDQTVFARLAATA-YQQDSGLVADQPVIKRFGLRLETRPSHVTRRDYDFEKPR 235
            H L F D     ++L     Y    G   D P I     R +   S V  +DY F+KP 
Sbjct: 183 KHTLYFSDASDSLSKLPEPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPA 242

Query: 236 LSMEAAFHS---DFQPD-LEDYDYPGRFTERARGKHLSQRALERHRHDYELAEGESDQPQ 291
            S          D+Q    + +D PGR+ +   G   SQ  L+  R     A G+S++P 
Sbjct: 243 YSFLQTVQGTELDYQQTRYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPL 302

Query: 292 LASGHFLPLGEHPRSDWNQLWLLTEVLHEGKQPQVLEESVTSDSQSRDGFTQGYRNHFTA 351
           L +G+   L EH     N+ W++  + H+G+QPQ L+E   S + +       Y N F+ 
Sbjct: 303 LRAGYKFDLQEHLDPAMNRDWVVVSINHQGEQPQALQEDGGSGATT-------YSNQFSL 355

Query: 352 TPWDIPFRPALRHPKPKVLGSQTAVVTGPAGEEIHCDEYGRVRVQFHWDREGQADDKTSC 411
            P  + +R A   PKP+V G   A V GP GEEI CDE+GRV++ F WDR    ++++SC
Sbjct: 356 IPGHLHWR-AEPQPKPQVDGPMIATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSC 414

Query: 412 WLRVSSSWAGDRYGGIAIPRVGMEVLVTFLEGDPDQPLVTGCLYHKEHQVPYDLPANKTR 471
           W+RVS  WAG +YG IAIPR+G EV+V FL GDPDQP++TG  YH  +  PY LP +KT+
Sbjct: 415 WVRVSQGWAGSQYGFIAIPRIGHEVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTK 474

Query: 472 TVLKTLSSPGGGGYNELRIEDRKGQEQIYIHAQRDWDENIEHDQKVRVGHERHDTVDANS 531
           TVL+T  +  G G+NEL  ED+ G+EQIY+HAQ+D+D  IE+D    + H+ H TV+ + 
Sbjct: 475 TVLRT-ETHQGEGFNELSFEDQAGKEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQ 533

Query: 532 YSEYRAEEHRTTHADRKTEIRANDHLTVGNSQQLKIGTGQFVEAGQEIHLSSGLKVVLEA 591
           +++ +  +H T   + +  +     L++  S  +K G     EAG EIH+ +G KVV+EA
Sbjct: 534 FTQIKHNQHLTVEWESREAVTGEQVLSIEGSLHVKTGKVWVNEAGTEIHVKAGQKVVIEA 593

Query: 592 GSELTFKAGGSFIKLDASGITMVGPLIRMNSGGSPGNGS---GAAPILPGQVKAADADVP 648
           GSE+T KAGGSF+K+D +G+ + G L+ +NSGGS G+GS   GA P LPG ++ A A  P
Sbjct: 594 GSEITVKAGGSFVKVDPAGVHLSGALVNLNSGGSAGSGSGFGGAMPALPGGLEPAVALAP 653

Query: 649 --GISLEALVK 657
              IS +AL++
Sbjct: 654 PQTISYQALLQ 664