Pairwise Alignments

Query, 404 a.a., general secretion pathway protein F from Pseudomonas stutzeri RCH2

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  184 bits (468), Expect = 3e-51
 Identities = 117/402 (29%), Positives = 216/402 (53%), Gaps = 6/402 (1%)

Query: 4   FEYLALDPRGREQKGLIEADSPRQARQLLREKQWAPLEVKQAKSKEDVSRGGFSFGRGLS 63
           + +  ++  G++  G + A S  + R  L+++    +++K+ K K  VS       R + 
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQH---IQIKKLK-KGSVSLLARLTHR-VK 66

Query: 64  ARDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAALRE 123
           ++D+ ++TRQLAT++   +PI +AL+        A++KS+L  +   V  G  L+ A+R 
Sbjct: 67  SKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRT 126

Query: 124 YPSAFPELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVASLAI 183
             + F  LY   V  GE +G+L  V ++LA Y ++ +Q R K+  AL+YP ++++ +L +
Sbjct: 127 ASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGV 186

Query: 184 VVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWLIVLGIIAGVLAMRAALR 243
             L+L  V+P+   +F   G ELP  T+ ++  S  V+ +     + I A +  ++A  +
Sbjct: 187 SYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRK 246

Query: 244 DP-ALRLRWHAFILRIPLIGRLSRATNTARFASTLAILTKSGVPLVEALSIAAAVIANLR 302
           +   +RL+     L+ P+IG +    + A+F+ TLA    +G+P++ +L   A    N+ 
Sbjct: 247 NSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVH 306

Query: 303 IRERVVEAAQKVREGSSLTRALDATGEFPPMMLHMIASGEKSGELDQMLARTARNQENDL 362
               + E  +    G  +  A+  T  FP M+L M+  GE+SG+LD ML + A   E ++
Sbjct: 307 FETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEV 366

Query: 363 AAQVSLLVGLFEPFMLVFMGAVVLVIVLAILMPILSLNQLVG 404
              V  L  + EP ++VF+G VV  +V+A+ +PI +L  ++G
Sbjct: 367 DNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNLMSVLG 408