Pairwise Alignments

Query, 404 a.a., general secretion pathway protein F from Pseudomonas stutzeri RCH2

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  212 bits (540), Expect = 1e-59
 Identities = 125/405 (30%), Positives = 213/405 (52%), Gaps = 7/405 (1%)

Query: 1   MAAFEYLALDPRGREQKGLIEADSPRQARQLLREKQWAPLEVKQAKSKEDVSRGGFSFGR 60
           +  FE+   +  G++  G +   SP + +  L+ +   P  VK  K  E +    F    
Sbjct: 23  VVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVK--KKAEPL----FKSDP 76

Query: 61  GLSARDLALVTRQLATLVQAALPIEEALRAAAAQSTSAKIKSMLLAVRARVMEGHSLAAA 120
            + A D+A++TRQ+AT++ A +PI   L          +++ +L  + A V  G  L+ +
Sbjct: 77  KIKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDS 136

Query: 121 LREYPSAFPELYRATVAAGEHAGHLGLVLDQLADYTDQRQQSRQKIQLALLYPVILMVAS 180
           L+ +   F +LY   V AGEH+G L  V D++A Y ++ +  + KI+ A+ YP  ++V +
Sbjct: 137 LKPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVA 196

Query: 181 LAIVVLLLGYVVPDVVKVFVNTGQELPALTRGLIATSDVVKNWGWLIVLGIIAGVLAMRA 240
           +A+  LLL +VVP    +F   G ELPA T+ +++ S  +++  +  V+GI+  + + + 
Sbjct: 197 IAVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWSFKK 256

Query: 241 A-LRDPALRLRWHAFILRIPLIGRLSRATNTARFASTLAILTKSGVPLVEALSIAAAVIA 299
           A L+    R +    +L+IP+IG +      ARFA TLA    +GVPL++ L  AA    
Sbjct: 257 AHLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASG 316

Query: 300 NLRIRERVVEAAQKVREGSSLTRALDATGEFPPMMLHMIASGEKSGELDQMLARTARNQE 359
           N   R  + +   +V  G  +  A+  TG FP M++ M+  GE+SG LD ML + A   E
Sbjct: 317 NYVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYE 376

Query: 360 NDLAAQVSLLVGLFEPFMLVFMGAVVLVIVLAILMPILSLNQLVG 404
             +   V  L  L EP M+V +G +V  +++ + +PI  +  +VG
Sbjct: 377 MQVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNVVG 421