Pairwise Alignments

Query, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 484 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  237 bits (605), Expect = 6e-67
 Identities = 152/412 (36%), Positives = 226/412 (54%), Gaps = 46/412 (11%)

Query: 78  SLPARSLYAQVEALTRRARNVSVIPVVEYADQEKAAALLEIGCVDYLLSPFSEAQLAALL 137
           +LP RS     EA T       VI +  +AD E A + L++G  D++L PF+  Q+   +
Sbjct: 68  NLPGRSGIEWEEAFTDPDHRADVIFMTGFADLETAISALKLGASDFILKPFNLEQMLQAV 127

Query: 138 RRQV-------------------CAETAQESFVSCSQAGRRLLAMAQRVSLTRAPILITG 178
           +R +                   C      S V      +R++  A     +RA +LI G
Sbjct: 128 QRCMNKRLNERLQYALQRDFQRHCTTQIIGSSVQTELLKQRIVQFAP----SRASVLIEG 183

Query: 179 ETGTGKELMARYIHRFSASPDAPFIAVNCAAIPEQMLESILFGHEKGAFTGAVSAQPGKF 238
           E+GTGKEL+AR IH  S     PF+ +NC AI  ++LES LFGH  GAFTGA  ++ G F
Sbjct: 184 ESGTGKELVARGIHEASGR-QGPFVPINCGAIAPELLESELFGHTSGAFTGAKKSREGLF 242

Query: 239 ELANGGTLLLDEIGELPLGLQAKLLRVLQEQRVERLGGRREIELNVRIIAATNRDLQQEV 298
            +ANGGTL LDEIGE+PL +QA LLRVL+++ V  +G  +E+ ++VR++AATNR+LQQEV
Sbjct: 243 RVANGGTLFLDEIGEMPLTMQASLLRVLEQRAVRPVGSEKEVNVDVRVVAATNRNLQQEV 302

Query: 299 AEGRFRADLMFRLDVLPLHISPLRERKEDVLPLARRF-------IGKYAPQEAHDELLTE 351
             GRFR DL +RL+VL + +SPLRERK+D+  L   F       +G   P+ A++++   
Sbjct: 303 ENGRFRGDLYYRLNVLKIEVSPLRERKQDLHELLPFFTKMLCAELGMPMPKWAYEDI--- 359

Query: 352 DACRALLQHDWPGNARELENTVQRALVLRNGLFIQPQDL-GLAAPAAASVRVEK----PL 406
               ++  +DWPGN REL+N ++R L+L        ++L GL   A   V + +     +
Sbjct: 360 ---SSMQDYDWPGNIRELKNLIERCLLLGKPPAHYWRELNGLPIYAEPEVTMSQSNNSEI 416

Query: 407 TLAAENGKAALRASGKW----AEYQHVIDTIRRFDGHKTKAAASLGMTSRAL 454
           +L     + +L     W     E  H+   +   +G+K+ AA  LG+  + L
Sbjct: 417 SLGDNVTQPSLGYPNDWPLSAVEKAHIQQIVALHEGNKSAAARDLGVARKTL 468