Pairwise Alignments

Query, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 460 a.a., sigma-54 dependent response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  235 bits (600), Expect = 2e-66
 Identities = 158/456 (34%), Positives = 233/456 (51%), Gaps = 33/456 (7%)

Query: 16  DELFDELPAKKIAIIGSAHEAACDFLQVGLRRQGCKVERYDDLDGLVKAAIDQFSLIFVV 75
           D     LP+    +I         FL   L ++   VE    ++   +        + +V
Sbjct: 5   DNNLKPLPSAVSVLIVDDEPGMRSFLNKALSKKFALVETAGSIEDAEQLRSRCHFDLLIV 64

Query: 76  VGSLPARSLYAQVEALTRRARNVSVIPVVEYADQEKAAALLEIGCVDYLLSPFSEAQLAA 135
              LP RS     EAL  + R   VI +  YAD E A   L  G  D+++ PF   Q+ +
Sbjct: 65  DIRLPGRSGIEWSEALDEQGRRSDVIFMTGYADLEVAIKALRAGASDFIMKPFHLEQMMS 124

Query: 136 ----------------LLRRQVCAETAQESFVSCSQAGRRLLAMAQRVSLTRAPILITGE 179
                           +LRR+V    +  + +  S A + +  + +RV+ T A +LI GE
Sbjct: 125 AVDRCIERRLLRRENLMLRREVSIGYSS-TIIGSSDAMKSVKQVIERVAPTNAVVLIQGE 183

Query: 180 TGTGKELMARYIHRFSASPDAPFIAVNCAAIPEQMLESILFGHEKGAFTGAVSAQPGKFE 239
           +GTGKEL+AR +H  S     PF+ VNC +I  ++LES LFGH  GAFTGA   + G F 
Sbjct: 184 SGTGKELVARQLHLLSGR-QGPFVPVNCGSIAPELLESELFGHTAGAFTGAKGNREGLFS 242

Query: 240 LANGGTLLLDEIGELPLGLQAKLLRVLQEQRVERLGGRREIELNVRIIAATNRDLQQEVA 299
            A+GGT+ LDEIGE+PL +Q  LLRVL+++ +  +G  +E+ ++VR+IAATNR L  EV 
Sbjct: 243 FASGGTIFLDEIGEMPLKMQTALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVE 302

Query: 300 EGRFRADLMFRLDVLPLHISPLRERKEDVLPLARRFIGKYAPQEAHDELL-TEDACRALL 358
            G FR DL +RL+VL + I PLR+R EDV+ L   F  + A +    E++ + +    L 
Sbjct: 303 AGNFRRDLYYRLNVLDILIPPLRDRPEDVVELTHHFTRQLAAELGVREVVWSHEDMVKLQ 362

Query: 359 QHDWPGNARELENTVQRALVLRNGLFIQPQDLGLAAPAAASVRVEKPLTLAAENGKAALR 418
           QH+WPGN REL N ++R ++L               PA    +  K  +LA++     L 
Sbjct: 363 QHEWPGNIRELRNMIERCILLGK------------PPAEYWKQQVKTESLASQG--YPLD 408

Query: 419 ASGKWAEYQHVIDTIRRFDGHKTKAAASLGMTSRAL 454
              K  E  HV   +    G+K+ AA  LG++ + L
Sbjct: 409 WPLKEVEKHHVTSVVDLHSGNKSAAARDLGVSRKTL 444