Pairwise Alignments

Query, 355 a.a., Flagellar motor switch protein from Pseudomonas stutzeri RCH2

Subject, 348 a.a., flagellar motor switch protein FliG from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (455), Expect = 7e-50
 Identities = 106/331 (32%), Positives = 182/331 (54%), Gaps = 2/331 (0%)

Query: 18  EIKPRPVQLRSVSSLDQAAILMLSMGDEISAGILRNFSREEIISISQAMARLSNVKQPMV 77
           E+    + +  +   ++AAIL+LS+ +E +AGI+R+   +++  +  AMAR  ++ Q  V
Sbjct: 10  EVVESTIDISEIPGEEKAAILLLSLNEEDAAGIIRHLEPKQVQRVGSAMARAKDLSQTKV 69

Query: 78  SDVISRFFDDYKEQSSIKGASRSYLAGMLGKALGGDITRSLLDSIYGEEIRAKMAKMEWL 137
           S V   F +D ++ ++I   S  +L   L  ALG D   +L+D I        +  ++W+
Sbjct: 70  SAVHRAFLEDIQKYTNIGMGSEDFLRNALVAALGADKANNLVDQILLGTGSKGLDSLKWM 129

Query: 138 DPKQFAALIAKEHAQMQAVFLAFLPPGMATEVLECMPAERQDELLYRIANLSEVNSDVIA 197
           DP+Q A++I  EH Q+Q + L++L P  + E+L         +LL RIANL EV    +A
Sbjct: 130 DPRQVASIIINEHPQIQTIVLSYLEPDQSAEILAQFAQRDALDLLMRIANLEEVQPSALA 189

Query: 198 ELEQLIDRSLK-VLSTQGSQVRGVKQAADIMNRFKGNRDQ-MFELLRAHNEELVGKIEDE 255
           EL +++++        Q +++ G+K AADIMN    N +  + E +R  +E+L  +I+D 
Sbjct: 190 ELNEIMEKQFAGQAGAQAAKIGGLKAAADIMNYLDNNIESVLMEGMREKDEDLATQIQDL 249

Query: 256 MYDFFILSRQNQDVLQTLLEVIPLDEWVVALKGAEPELVKAIQGAMPKRQAQQMESINRR 315
           M+ F  L   +   +Q LL  +P D    ALKGA+  L + I   M KR A+ M+     
Sbjct: 250 MFVFENLVEVDDQGIQKLLRDVPQDVLQKALKGADDTLREKIFKNMSKRAAEMMKDDLEA 309

Query: 316 QGPVPLSRVEQVRKDIMAVVREMSADGELQV 346
             P+ +S VE  +K+I+++ R M+ +GE+ +
Sbjct: 310 MPPIKVSDVEAAQKEILSIARRMADNGEIML 340