Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

Subject, 259 a.a., RNA polymerase sigma factor SigF from Synechococcus elongatus PCC 7942

 Score = 70.5 bits (171), Expect = 3e-17
 Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 18/194 (9%)

Query: 54  EDMEQIGMIGLLEGLRRYG-EPDEQFGRFAALRIRGAILDELRRQDWRPRQVRQQA--HK 110
           E++ QIG +GL+  + R+  E  + F  FA   IRG I   LR +    R  R+ A  H+
Sbjct: 56  EELVQIGSLGLIAAIDRFELERGKAFSSFAVPYIRGEIQHYLRDRSGTVRVPRRWAELHQ 115

Query: 111 VRDAIR-ELTRQLGHSPSDEEIKTFTGLDEKDYQAFLWADSSEAIESLDELLQSGHEHFP 169
             D +R +L R+LG SP++EE++   GLD +++Q       +    SLD+ L +  E   
Sbjct: 116 QIDPLRHKLQRELGRSPTEEELRQGLGLDAEEWQEVRLIGRNRTTLSLDQPLYADEEQVT 175

Query: 170 D-----------TAELFEERLLKERLLEQALSRLDERERLVLTLYYQHELSLKEIALVLE 218
                       + +L EE  ++   L+QA+  L++R R +L   + ++L+ +E+A  L 
Sbjct: 176 SLGDSIADPKYRSFQLAEEDRIR---LQQAMQLLEQRTREILEFVFFYDLTQREVAEKLG 232

Query: 219 VSDARVCQLSKQAI 232
           +S   V +  K+ +
Sbjct: 233 LSAVTVSRQVKKGL 246