Pairwise Alignments

Query, 242 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

Subject, 249 a.a., flagellar basal-body rod protein FlgF from Vibrio cholerae E7946 ATCC 55056

 Score =  172 bits (435), Expect = 7e-48
 Identities = 107/250 (42%), Positives = 152/250 (60%), Gaps = 9/250 (3%)

Query: 1   MDRLGYTAMTAASRTMMSLQVRSNNLANVNTPGFRADLERAQAVAVEGYGYDSRHMALIE 60
           MDR  + AM+ A + M ++Q+R+NNLANV+T GFRADL +A+++   G G  SR  ++ E
Sbjct: 1   MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE 60

Query: 61  NNGVSLAAGPMVATGRELDFAVKGTGLIVLQDGEG-EAYTRQGSMQVDAEG-RLTLNGRA 118
             G + A G ++ TGR+LD  ++G G I + D  G E  TR G++++D  G  L  NG  
Sbjct: 61  RPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNGHP 120

Query: 119 VLGE-GGPIVLP-EYDRMEIGNDGTVSVM---APGDWMMAEVDRIRLVDVPAANLMKNQA 173
           VLGE G PI LP   +++EIG DGT+SV    AP D  M  VDRI+LV +   +L K+  
Sbjct: 121 VLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPAD-AMEVVDRIKLVRLNDQSLFKDVN 179

Query: 174 GLL-VTRDGEPAQPSEDVRLASGFLESSNVSAIDELASTMSLNRLFETQVKMMKAAEDLS 232
           GL   T      +    V++ +G LE SNV+AI E+ S + L R FE QVKMM  AE++ 
Sbjct: 180 GLFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEMD 239

Query: 233 DAGNRMIRGS 242
            A + ++R S
Sbjct: 240 KASDSLLRSS 249