Pairwise Alignments

Query, 447 a.a., alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) from Pseudomonas stutzeri RCH2

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  436 bits (1121), Expect = e-127
 Identities = 226/443 (51%), Positives = 302/443 (68%), Gaps = 6/443 (1%)

Query: 5   VIFIDDEAAIRQAVQQWLELSGFQVRTFSRAREALTALD-RDFPGVLISDVRMPDLDGLG 63
           V  IDDE+ IR A+ Q  EL+    + F+   EAL A+  +  P V++SD+ +P L G  
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 64  LLEQLVALDADLPVIMVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAMDKRRL 123
           LL  ++  D++LPVI++TGHGD+ MAV+A+  GAYDFIEKPF PERL+D+V RA++KRRL
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 124 VCENRQLREQFARKGRIESQLLGVSRAMDNLRRQVLELAGTDVNVLIRGETGSGKEQVAR 183
             ENRQL+        +  +++G + A+  LR  + ++A T  ++L+ GETG+GKE VAR
Sbjct: 124 TLENRQLKRSLKVSQTLGPRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVAR 183

Query: 184 CLHDFSPRAGGPFVALNCAAIPETIFESELFGHESGAFTGAQGKRIGRIEHAAGGTLFLD 243
            LH+ S R    FVA+NC A+PE + ESEL+GHE GAFTGA  +R+G+ EHA GGTLFLD
Sbjct: 184 SLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLD 243

Query: 244 EIESMPLAQQVKLLRVLQEKTLERLGSNRSIEVDLRVISAAKPDLLEEVRGGRFREDLLY 303
           EIESMP+  Q++LLRVLQE+ +ER+GSN  I +D+RVI+A K DL +    G+FR+DL Y
Sbjct: 244 EIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYY 303

Query: 304 RLNVAELHIPPLRERREDIPLLFEHFASQAAQRHGRAAPPVTPGELTQLLAHDWPGNVRE 363
           RLN+  L IPPLRERREDIP LF HF   AA R+G+AA  +T  ++  LL+HDWPGNVRE
Sbjct: 304 RLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRE 363

Query: 364 LINAAERHA-LGLSAPAPASSGGQS----LAEQMEAFEAQCLHNALQQCKGNITEVMTQL 418
           L NAAER+  LG  A    S   +S    L EQ+  FE   L   L +C G+I   M +L
Sbjct: 364 LRNAAERYVLLGKLAQFAESHEPKSKLLGLNEQVAEFEKSLLEQTLIECGGSIKATMERL 423

Query: 419 QLPRRTLNEKMQRHGLSRSDYLP 441
            LPR+TL +KMQ++ L +  Y P
Sbjct: 424 HLPRKTLYDKMQKYQLDKESYKP 446