Pairwise Alignments

Query, 352 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

Subject, 310 a.a., integrase from Sinorhizobium meliloti 1021

 Score = 83.2 bits (204), Expect = 8e-21
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 12/207 (5%)

Query: 122 GISPKTLNNELSYLRAMFNELRRLGEIEFENPLSMLRAIRVQERELSCLDSHQIERLFQV 181
           G S  T+N +++ L  +  +  ++G+I   + L   +  + +   L  L++ + E LF+ 
Sbjct: 97  GNSNATINRKMAALGKLLRKAYKMGDI---HNLPEFKRQKEKAGRLRFLEADEEEVLFRE 153

Query: 182 LRSMVHPHVELIATICLV-TGCRWGEAQGLTISRVGDGMLQFVNTKSKRRRVVPIDQKLA 240
           + S     + L  +I LV TG R GEA  L  + + +G   F  TKS R R VP+  +  
Sbjct: 154 IAS--RSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAK 211

Query: 241 ERIRQHL-RQHGAFTNC-----RDRFDEAVVRAGLGLPAGQKSHVLRHTFASHFIANGGN 294
           + +++   R  G F+       R  ++ A V AGLG       H+LRHT AS  +  G +
Sbjct: 212 DALKRVADRSPGPFSRIDQQKYRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRGGID 271

Query: 295 ILTLQKILGHSSLAMTMRYAHLAPDHL 321
           +  +Q  LGH +L MTMRYAHLA   L
Sbjct: 272 LRRVQMWLGHQTLEMTMRYAHLASHDL 298