Pairwise Alignments

Query, 830 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 585 a.a., histidine protein kinase DivJ from Caulobacter crescentus NA1000

 Score =  150 bits (379), Expect = 2e-40
 Identities = 99/317 (31%), Positives = 160/317 (50%), Gaps = 12/317 (3%)

Query: 518 PQAVAQVERIQQGL--------QQRYEAE----YRFADALGEYHWLLSRGRVLEQDPETG 565
           P  V + + + +GL        +QR  A     +R   A   ++  L   RV+  D    
Sbjct: 222 PPGVTRADLVNRGLTGAAAPGDRQRLTAAIAQAHREGSASLTFNPALGVERVVALDMHRV 281

Query: 566 MARVLAGTHVDIDALKRVEAELRAATLQAQAASEAKGRLLSGISHELRTPLNAILGFAQL 625
               L G   DI   +  E  L  A + A+A +  + R L+ +SHELRTPLNAI+GF+ +
Sbjct: 282 APNQLVGVLRDITVERHREHALDQARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDI 341

Query: 626 MRMDCDDSSQSEAAEYLDEILLASRHLNQLLGEILEWSSLQKERPQLELQPVDVCSLMRE 685
           MR           AEY + I  +  HL  L+ ++L+ S ++ ER +L+    D    ++ 
Sbjct: 342 MRARMFGPLSDRYAEYAELIHESGGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQA 401

Query: 686 CAELIALEVQQRGLQLDLSLPDDGLLVLAEPRRLRQVLLNLLSNAMKYNVPNGHISLRAE 745
              L+ ++    G+QL   LP   L V A+ R L+Q++LNL+SNA+K+    G +++ A 
Sbjct: 402 AMRLLRVQSDTAGVQLRGVLPPGELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAH 461

Query: 746 TSPGHVRILVEDTGLGIDQAQQAQVFEPFQRLGRENSMIQGTGIGLSLCLEFARLMNGQL 805
              G + I+V DTG+GI      ++  P+++ G      +GTG+GLSL   FA+L  G++
Sbjct: 462 GYDGVLEIVVADTGVGISPEDLERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEM 521

Query: 806 GLHSEPGVGSRFWIELP 822
            + S  G G+   + LP
Sbjct: 522 VIESRLGAGTTVSVRLP 538