Pairwise Alignments

Query, 469 a.a., Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen from Pseudomonas stutzeri RCH2

Subject, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

 Score = 94.4 bits (233), Expect = 7e-24
 Identities = 105/384 (27%), Positives = 167/384 (43%), Gaps = 35/384 (9%)

Query: 17  ETQNLEFKEAGNQYDTRKLCRYCVAIANEGGGHLVLGIADKPPRA--VVGSQAFPDTQDI 74
           E   LEFKE+ N    +++C    A AN  GGH++LG+ D        + +Q      DI
Sbjct: 17  EGYTLEFKESLNASLAKEIC----AFANSDGGHILLGVTDSGDITGYPLSNQDDARITDI 72

Query: 75  AEKLFHWVGFRVDVEAVAHPEGRVVVFSIPARPKGTAYHHDGAYLMRSGEELVPMSEDQL 134
           A  +     F V++E V +    VVV ++P + +   Y   G Y +R+G +   +  +++
Sbjct: 73  ARNMDP--SFSVNLEKVDN----VVVITVP-KGENKPYSTGGLYYVRNGSQSQKLKREEV 125

Query: 135 RKIFA-EGQPSWLENPSLKDVSAQDVVQLLDTQTFFDLMRLPYPTDQEGVLTRLLDERLI 193
            ++F   G  S+ E P+ +           D +   +   L       G+  +L  E L+
Sbjct: 126 IELFKYNGLISFEEIPNKE----------FDLKKDLNNSALNNFITASGITNKLKKEDLL 175

Query: 194 ERT---SAGFNILHIGAVLLAKNMRQFPDISRKAARVILYAGESKMQTVSDVTGEKGYAV 250
                   GF + + G +    N  +F          +LY G SK   +      K    
Sbjct: 176 NNLYLLKDGF-LKNAGVLYFCNNSTKF--FRNAHITCVLYEGTSKSNILDRKDFSKDIYS 232

Query: 251 GFAGLVQYVMGKLPQNEVIEGAIRKEVKLLPEVVVRELLANALIHQDFDMGGTSPVVEVF 310
            F     Y+  KL   E I G  R E   LP+  +RE L N++ H+D+   G    V++F
Sbjct: 233 NFNDSFDYICSKL-NTEYIIGKERVERLELPKEAIREALVNSIAHRDYFSSGHIQ-VDIF 290

Query: 311 SNRVEISNPGEPIVPVERFIDGYQS--RNERLADLMRRFGICEEKSSGIDRVIEAAELMQ 368
            +++EISNPG  ++ +     G +S  RN  LADLM R  + E   SGI R+ E+ E   
Sbjct: 291 QDKLEISNPGGLVLGLSYSELGKRSIPRNPLLADLMLRSKLVERVGSGIIRIRESMESYG 350

Query: 369 LPAPEFLTSHRRTIVVIHGPRSFR 392
           L   EF  S      V+   + F+
Sbjct: 351 LNC-EFNVSENYFSTVLGRKKGFK 373