Pairwise Alignments

Query, 1096 a.a., Small-conductance mechanosensitive channel from Pseudomonas stutzeri RCH2

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (253), Expect = 1e-25
 Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 2/199 (1%)

Query: 870  GIVATLSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFISGLIILFERPVRIGDVVTIGN 929
            GI+  LS +G++   +        V +GF LQ+  +NF +G+++L  RP  +GD V  G 
Sbjct: 357  GILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGG 416

Query: 930  LSGTVSRIRIRATTITDFDRKDIIVPNKTFITGQLINWSLSDTVTRVTLKVGVAYGSDLE 989
            + G VS + +  TTI  FD + IIVPN   I G +I     + + RV +  G+ Y  DL 
Sbjct: 417  VDGKVSHMSLVNTTIRTFDNQIIIVPNSK-IWGDVIKNVTHERIRRVDMVFGIGYSDDLL 475

Query: 990  QVKTLLYKAAQANPRVLKDPEPQVFFLNFGESTLDHELRIHVRDLGDRNPATDEINRFID 1049
            + + +L    +++P VLK PEP +       S++D  +R  V+   D      ++ + + 
Sbjct: 476  KAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVK-TDDYWDVYWDVTKEVK 534

Query: 1050 REFNKAGINIAFRQVDVFL 1068
              F++ GI+I F Q DV L
Sbjct: 535  LRFDREGISIPFPQQDVHL 553