Pairwise Alignments

Query, 367 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 344 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 87/349 (24%), Positives = 146/349 (41%), Gaps = 36/349 (10%)

Query: 3   RRDILTAAGVGLAATALAGCNDKSDKPVAGESKQAEQQTFNWKMVTSWPKNFPGVGVG-- 60
           RR  +  AGVG  A  LA        P   +SK        W+M T     + G  +   
Sbjct: 4   RRKFIQTAGVGALAAPLA-------TPALAQSK------ITWRMQT-----YAGAALAEH 45

Query: 61  -AERFANLVNEMSGGRLKIKVYAAGELVPALEVFDAVSRGTAEMGHGAPYYWKGKVPAAQ 119
             +   ++ N+++G R++I++Y A +LVP  E+F A+ RGT +                 
Sbjct: 46  VVKPAIDMFNKIAGDRMQIELYYADQLVPTGELFRAMQRGTIDAVQSDDDSMASPTDVTV 105

Query: 120 FFCALPFGPN-AQEMNAWLHRGGGMQLWEEVYKPYGVLPMACGATGVQTAGWFNKE-INS 177
           F    PF    + ++    ++ G  ++W+E Y   GV  ++ GA       +  K+ I S
Sbjct: 106 FGGYFPFASRYSLDVPVLFNKYGLNEIWDEEYSKVGVKHISAGAW--DPCHFATKDPIRS 163

Query: 178 VDDFKGLKMRTPGLGGEVLTKMGGTVVNMPAGEIFTALQTGAIDATEWIGPYNDLALGLH 237
           + D KG ++ T    G  L++ G   V +P  +I  A+QTG +D   W G   D  +G  
Sbjct: 164 LADLKGKRVFTFPTAGRFLSQFGVVPVTLPWEDIEVAMQTGELDGIAWSGITEDYTVGWA 223

Query: 238 KASKYYYT----PGWQEPNVTFELDVNLKAWDTLPDDLKAIVRAAARDVNGDMLDDYNAK 293
             + Y+ T      W           N   W+ LP+DL+ + R             +   
Sbjct: 224 DVTNYFLTNNISGAW-----AGSFFANQGRWNELPEDLQTLFRVCCD--QSHYYRQWWYW 276

Query: 294 NMEALEQLREQGVEVRRLPDEVLARLKEVAAEVVDASAKADPVASKVWE 342
             EA  ++    +E+  +PDE  A +++ A +  D  A   P  ++V E
Sbjct: 277 GGEADLRVNGPKMELTSIPDEEWATVEDAAYKFWDEIAAESPTKARVVE 325