Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 774 a.a., Transcription accessory protein (S1 RNA-binding domain) from Pseudomonas fluorescens FW300-N1B4

 Score = 1261 bits (3262), Expect = 0.0
 Identities = 647/777 (83%), Positives = 697/777 (89%), Gaps = 4/777 (0%)

Query: 1   MDSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRY 60
           MDSINSRIA ELGVRPQQV AAVALLDEGSTVPFIARYRKEVTGSLDD QLR+LEERLRY
Sbjct: 1   MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDIQLRHLEERLRY 60

Query: 61  LRELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120
           LRELDERR SILASI+EQGKLTP+L+R+I LADTKTRLEDLYLPYKQKRRTKGQIALEAG
Sbjct: 61  LRELDERRISILASIQEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120

Query: 121 LGELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRD 180
           LGELAD LF +P L PE EA RFIDAEKG ADVKA LEGAKYILMERFAEDA LL KLR+
Sbjct: 121 LGELADGLFNDPTLNPEAEAARFIDAEKGVADVKAALEGAKYILMERFAEDAGLLDKLRN 180

Query: 181 FLKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVG 240
           +LK  ATLSARV+ GKE EGAKF DYFEHDE LK+ PSHRALAIFRGRNEGILS +LKVG
Sbjct: 181 YLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG 240

Query: 241 DETPGSMHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDKAE 300
           DE PG+MHP EGMIG++FGI N+ RAADKWLGEVVRWTWKVKLYTHLETDLLGELRD AE
Sbjct: 241 DELPGTMHPCEGMIGQQFGIQNQNRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDGAE 300

Query: 301 DDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAPRN 360
            +AI VFA NLHDLLL+APAGPRATL LDPGLRTGCKVAVVDATGKLL+ ATVYPH P N
Sbjct: 301 TEAINVFAHNLHDLLLSAPAGPRATLGLDPGLRTGCKVAVVDATGKLLDHATVYPHVPHN 360

Query: 361 DWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSEAGASV 420
            WD TLA+LA LCAKH+VDLIAIGNGTASRE+DKLA ELI+K P +K+TK+MVSEAGASV
Sbjct: 361 KWDQTLAVLAALCAKHSVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGASV 420

Query: 421 YSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARS 480
           YSASELA+KEFPDLDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLAR 
Sbjct: 421 YSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 481 LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVPRL 540
           LDAVVEDCVNAVGVDVNTAS ALLARISGLN+TLAQNIV  RD +GAFK+R+ LKKV RL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVSHRDEHGAFKTRAALKKVARL 540

Query: 541 GEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRLDP 600
           GEKTFEQAAGFLRVMNG+NPLD+SAVHPE YPLV+RIA +T RDIRSLIGD++FLKRLDP
Sbjct: 541 GEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP 600

Query: 601 KQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVT 660
           K++TDE FGL TV+DILQELEKPGRDPRPEFKTAEFQEGVE L DL+ GM+LEGVVTNVT
Sbjct: 601 KKYTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVT 660

Query: 661 NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMRMS 720
           NFGAFVDIGVHQDGLVHISALSEKF+KDP E VKAGD+VKVKVMEVDIPR+RVGLSMRMS
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 721 DTPGAKTDGPRGGQARGSAGKPQGNTPRSERHAKEDKPAPANAAMAALFANAKQLRK 777
           DTPG K DG RG +   +  + Q   PR E  A     APAN AMA+LFANAKQL+K
Sbjct: 721 DTPGEKIDGARGARPGSAPRQSQNTAPRKETTA----AAPANNAMASLFANAKQLKK 773