Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 778 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  934 bits (2413), Expect = 0.0
 Identities = 493/773 (63%), Positives = 591/773 (76%), Gaps = 17/773 (2%)

Query: 8   IANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYLRELDER 67
           IA+EL VR  QV A +ALLD+G+TVPF+ARYRKEVTG LDDTQLR L  RL YLREL++R
Sbjct: 9   IADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLGYLRELNDR 68

Query: 68  RASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGELADA 127
           R  IL+SI+ QGKLTPELK  I  AD+KTRLEDLYLPYK KRRTKGQIA+EAG+  LA+ 
Sbjct: 69  RDVILSSIDAQGKLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLANL 128

Query: 128 LFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDFLKHNAT 187
           L       PE EA  FI+ E GFAD +AVL+GA+YILMERFAEDA+L+ K+R+ L   A 
Sbjct: 129 LLQQRPANPEAEAAAFINTEAGFADTRAVLDGARYILMERFAEDAELIRKVREHLSGVAV 188

Query: 188 LSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVG-DETPGS 246
           L ++V+ GKE EGAKF DYFEH E+L   PSHRALA+ RGRNEGILS+S+    D  PGS
Sbjct: 189 LQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVADPDSEPGS 248

Query: 247 MHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDKAEDDAIGV 306
               E +I    G+      ADKWL  VV  TW++K+   +ET+ +  LR++AEDDAI V
Sbjct: 249 GSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQAEDDAIKV 308

Query: 307 FARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAPRNDWDGTL 366
           FARNLHDLL+AAPAG +AT+ LDPGLRTG KVAVV+ TGKL+  +T++PH P+N WD +L
Sbjct: 309 FARNLHDLLMAAPAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEPQNQWDKSL 368

Query: 367 AILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLK--LTKIMVSEAGASVYSAS 424
             LA L + H V+LIA+GNGTASRE+DKLA ELI  V      LTK+MVSEAGASVYSAS
Sbjct: 369 RTLANLVSMHKVELIAVGNGTASRETDKLAAELIAAVKEHHPTLTKVMVSEAGASVYSAS 428

Query: 425 ELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARSLDAV 484
           ELAA EFPDLDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVSQ +L++SL+AV
Sbjct: 429 ELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSQSLEAV 488

Query: 485 VEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVPRLGEKT 544
           VEDCVN+VGVDVN AS  LL+++SGLN TLA+N+V +RD +G FKSR EL KVPRLG K 
Sbjct: 489 VEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLKVPRLGPKA 548

Query: 545 FEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRLDPKQFT 604
           FEQAAGFLR+  G+NPLDASAVHPE Y LV+ IAQ     + +LIG++  ++ L    F 
Sbjct: 549 FEQAAGFLRIREGDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIRTLKAGDFV 608

Query: 605 DEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVTNFGA 664
            + FGL TV+DIL+EL+KPGRDPR EFKTA F+EGV ++ DL+P M+LEGVVTNVTNFGA
Sbjct: 609 TDAFGLPTVTDILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEGVVTNVTNFGA 668

Query: 665 FVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMRMSDTP- 723
           FVD+GVHQDGLVHIS+LS+KFV DP+ VVKAGD+VKVKVMEVD+ R+R+GLSMR+ + P 
Sbjct: 669 FVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLSMRLDEKPQ 728

Query: 724 ---GAKTDG-PRGGQARGSAGKPQGNTPRSERHAKEDKPAPANAAMAALFANA 772
               AK  G P    A+   GKPQ         +K  KP   NAAM   FA+A
Sbjct: 729 PAQAAKGKGAPAARTAQAKGGKPQ---------SKPQKPQAINAAMGNAFADA 772