Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 783 a.a., RNA-binding protein from Herbaspirillum seropedicae SmR1

 Score =  987 bits (2552), Expect = 0.0
 Identities = 513/786 (65%), Positives = 618/786 (78%), Gaps = 18/786 (2%)

Query: 1   MDSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRY 60
           + SI  R+A EL  +P QVAAA+ALLDEG+TVPFIARYRKEVTG LDD QLR LEERLRY
Sbjct: 2   LPSIEQRLALELAAKPVQVAAAIALLDEGATVPFIARYRKEVTGGLDDVQLRLLEERLRY 61

Query: 61  LRELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120
           LREL+ RRA+I+ASIEEQGK+TP L   I  A+ KTRLEDLYLPYK KRRTK QIA EAG
Sbjct: 62  LRELESRRAAIIASIEEQGKMTPVLLDAITHAEDKTRLEDLYLPYKPKRRTKAQIAAEAG 121

Query: 121 LGELADALFGNPDLTPEQEAERFIDA--------EKGFADVKAVLEGAKYILMERFAEDA 172
           L ELADAL  +P L PE+EA +FI            G  D KA L+GA+ ILMERF+EDA
Sbjct: 122 LTELADALLNDPTLNPEEEAAKFIKPAFTTDNGDNPGVPDTKAALDGARQILMERFSEDA 181

Query: 173 DLLAKLRDFLKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGI 232
           +LL  LR++L  +  + ++V+ GK++ G KF+DYF++ E     PSHRALA+FRGR E +
Sbjct: 182 ELLQSLREYLTEHGVVESKVIEGKQDAGEKFADYFDYSETYSTIPSHRALALFRGRREEM 241

Query: 233 LSVSLKVGDETP-----GSMHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHL 287
           L+V L++  E          +P EG I  RFG++N+GRAADKWL + VRW W+VK++ HL
Sbjct: 242 LNVILRLDSEEEKPKWDAPHNPCEGRIASRFGVSNKGRAADKWLSDTVRWAWRVKVFMHL 301

Query: 288 ETDLLGELRDKAEDDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKL 347
           ET+L+  LR+KAE +AI VFARNL DLLLAAPAGPRAT+ LDPGLRTG KVA+VDATGK+
Sbjct: 302 ETELMTNLREKAEAEAINVFARNLKDLLLAAPAGPRATMGLDPGLRTGVKVAIVDATGKV 361

Query: 348 LETATVYPHAPRNDWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLK 407
           + T T+YPH PRNDW+G+L  L++L  KH V LI+IGNGTASRE+DKLA +LI+  P LK
Sbjct: 362 VATDTIYPHQPRNDWNGSLHTLSQLAEKHNVSLISIGNGTASRETDKLAQDLIKLRPELK 421

Query: 408 LTKIMVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQ 467
           LTKI+VSEAGASVYSASE A+KE PDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQ
Sbjct: 422 LTKIVVSEAGASVYSASEFASKELPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQ 481

Query: 468 YQHDVSQLKLARSLDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGA 527
           YQHDVSQ +LARSLDAVVEDCVNAVGVDVNTASA LLAR+SGLN+++AQ+IV +RD  G 
Sbjct: 482 YQHDVSQSQLARSLDAVVEDCVNAVGVDVNTASAPLLARVSGLNASVAQSIVSYRDMKGM 541

Query: 528 FKSRSELKKVPRLGEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRS 587
           F SR+ L++VPRLGEKTFEQAAGFLRVMNGENPLDASAVHPE+YPLV++I  D  +D++S
Sbjct: 542 FSSRAALREVPRLGEKTFEQAAGFLRVMNGENPLDASAVHPESYPLVEKILADIKKDVKS 601

Query: 588 LIGDSAFLKRLDPKQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLE 647
           ++G ++ LK L P ++ DE FG+ TV+DIL+EL+KPGRDPRPEF TA F+EGVE++ DL 
Sbjct: 602 VLGQTSLLKGLSPAKYADEKFGVPTVTDILKELDKPGRDPRPEFTTATFKEGVEEIKDLR 661

Query: 648 PGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVD 707
           P M+LEGVVTNV  FGAFVDIGVHQDGLVHISALS  +VKDP+ VVKAG +VKVKV+EVD
Sbjct: 662 PDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTYVKDPHTVVKAGQVVKVKVLEVD 721

Query: 708 IPRQRVGLSMRMSDTPGAKTDGPRGGQARGSAGKPQGNTPRSERHAKEDKPAPANAAMAA 767
             R+R+ L+MR++DT  A   G R  Q RG     +  +    +  +E   APAN AMAA
Sbjct: 722 EKRKRIALTMRLNDT--APAPGARNEQ-RGDRTDSRRLSQHQNQRGREQ--APANNAMAA 776

Query: 768 LFANAK 773
            FA  +
Sbjct: 777 AFAKLR 782