Pairwise Alignments

Query, 360 a.a., Signal transduction histidine kinase, nitrogen specific from Pseudomonas stutzeri RCH2

Subject, 908 a.a., signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  108 bits (271), Expect = 4e-28
 Identities = 116/406 (28%), Positives = 169/406 (41%), Gaps = 65/406 (16%)

Query: 3   NEALQRL------LIENLTTATLLLNSRLRLEYMNPAAEMLLAVSGQRSHGQFISELFTE 56
           N AL R       +++ + +A ++ ++  R+   NPAAE    V+   +HG+ + E+  E
Sbjct: 512 NRALSRAQRHLKGVLDAMPSAIVVADAADRVVLWNPAAERRFGVAAPSAHGRPLVEVAPE 571

Query: 57  SPEALAALRQA------VEEAHPFTKREATLTSATG----QSLTV-DYAVTPVLTRQETM 105
               L  L  A      V      T  E    S  G    +S  V D    P+ T +E  
Sbjct: 572 LARHLPRLHAARRGGAAVPPERVVTPVELPAGSQPGTLSRESRRVEDVTAIPLETGEEMW 631

Query: 106 LLLEVLPRDRLLRITKEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLAREL---- 161
            +L +        +     Q  K  +   L  G+AHEI NPLGGI    Q L R L    
Sbjct: 632 GILRLDDVSERAAMEDLMVQAEKMASVGGLAAGMAHEINNPLGGILQGVQNLRRRLLDDL 691

Query: 162 ---------------------PEEHLKDYTEVIIEEADRLRNLVDRMLGSNKL--PSLAM 198
                                 E  +    + I E  +R   +V  ML  ++   PS   
Sbjct: 692 PANRAAAERQGMDFDRIAAYAEERRIGGLLDGIRESGERATRIVANMLTFSRRSDPSRVP 751

Query: 199 TNIHEVLEHVASLIEAECQGS-------IILVRDYDPSIPEVLMDREQMIQAVLNIMRNA 251
             I+++LE    L   +   +       I +VR YDP +P V     +M Q  LN+ +NA
Sbjct: 752 VQINDLLERTLELAVTDYSLARNYDFKRITVVRRYDPQLPPVRCSASEMEQVFLNLFKNA 811

Query: 252 MQALAGQNDLGLGRLTLRTRTLRQFTIGHIRHRLVARIEIIDNGPGIPAELQNTLFYPMV 311
            QALA ++D     LTL T       + H+      RIE+ DNGPG+  EL+   F P  
Sbjct: 812 AQALALRDDGPPPVLTLTTAV----EVAHL------RIEVADNGPGMSPELRRRAFEPFF 861

Query: 312 SGRP--DGTGLGLAITQNI-ISQHQGLIECESHP-GHTVFSIFLPL 353
           + R    GTGLGL++   I ++ H+G I  E  P G  V  + LPL
Sbjct: 862 TTREAGAGTGLGLSVAYFIVVTNHKGTITIEEAPEGGAVVVVRLPL 907