Pairwise Alignments

Query, 657 a.a., ATP-dependent Zn proteases from Pseudomonas stutzeri RCH2

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  168 bits (425), Expect = 1e-45
 Identities = 89/239 (37%), Positives = 141/239 (58%), Gaps = 3/239 (1%)

Query: 173 VTFADVIGAAEAKQALSDVTAY-LRDPAAYARLGARPPKGVLLTGEPGTGKTQLAKALAS 231
           + ++DV G  + KQ L +   + +++   + R+G RPPKGVLL G PGTGKT LAKA+A+
Sbjct: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563

Query: 232 ESNASFIQVTGSDFSSMYFGVGIQKVKSLFRTARKQAPCIIFIDEIDGIGKRAEQTRSSD 291
           ES A+FI V G +  S + G   + ++ +FR AR+ AP +IF DEID +  +      S 
Sbjct: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623

Query: 292 AESNRIINQFLAEMDGFDGAAGVLVLGATNFPNSLDPALVREGRFDRSIAVGLPGLDDRE 351
             + +++NQ L E+DG +    V+++ ATN P+ LD AL+R GR DR + V +P    R 
Sbjct: 624 GVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARL 683

Query: 352 ALFRLYAGKITAAADLDFPQLARNTVGLTPAAIAYIVNHAALLAAR--AGAKQVDMAHF 408
            +F+++   +    D++  +LA+ T G T A I  +   AA++A R    ++ V+  HF
Sbjct: 684 EIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742



 Score =  139 bits (351), Expect = 4e-37
 Identities = 73/203 (35%), Positives = 116/203 (57%), Gaps = 3/203 (1%)

Query: 167 QRKGSGVTFADVIGAAEAKQALSDVTAY-LRDPAAYARLGARPPKGVLLTGEPGTGKTQL 225
           + K   VT+ D+ G  E  + + ++    +R P  + +LG  PPKGVLL G PGTGKT L
Sbjct: 168 ETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLL 227

Query: 226 AKALASESNASFIQVTGSDFSSMYFGVGIQKVKSLFRTARKQAPCIIFIDEIDGIGKRAE 285
           AKA+A+E+ A+F  + G +  S Y G   + ++ +F  A + +P IIFIDEID +  + +
Sbjct: 228 AKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRD 287

Query: 286 QTRSSDAESNRIINQFLAEMDGFDGAAGVLVLGATNFPNSLDPALVREGRFDRSIAVGLP 345
           +  +S     R++ Q L  MDG +    +++L ATN P+S+D AL R GR DR I +G+P
Sbjct: 288 E--ASGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIP 345

Query: 346 GLDDREALFRLYAGKITAAADLD 368
               R  + +++   +    D +
Sbjct: 346 DRHGRNEILQIHTRNMPLQPDYE 368