Pairwise Alignments

Query, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

Subject, 668 a.a., High-affinity choline uptake protein BetT from Pseudomonas fluorescens FW300-N1B4

 Score =  546 bits (1406), Expect = e-159
 Identities = 284/664 (42%), Positives = 419/664 (63%), Gaps = 21/664 (3%)

Query: 6   PSSSHLNAPVFYGSAVIILALVIYSVAFQSHAQTLFGDTQAWIIANVSWLYILAVALILL 65
           P    +N  VFY S  +IL L    +     A  + G  QAW+  +  W Y++ +A  L+
Sbjct: 11  PEKVTVNGWVFYTSTALILLLTAILIIAPQEAGRMLGIAQAWLSRSFGWYYMVVIAAYLV 70

Query: 66  MVVLLAFSRYGDIKLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLSPPTG 125
            VV LAFS YG +KLG     PD+S   W  MLFS+G+GI L++FG +EP+ H+ +PP G
Sbjct: 71  FVVGLAFSSYGKLKLGSKDDTPDFSYGAWAGMLFSSGIGISLLYFGASEPLDHYFNPPEG 130

Query: 126 EGGTTLAAREAMKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGER-I 184
             G+ LAAR+A+++TF HWGLH W+IYA+V + +AYFAYRH  PL LRSALYPL+GER +
Sbjct: 131 VAGSNLAARQAVQLTFLHWGLHGWAIYALVGLAVAYFAYRHNQPLALRSALYPLVGERWV 190

Query: 185 YGPIGHAVDIFAIIGTVLGVATSLGLGVTQINTGLNHLYGLPISVPVQIGLIIATTLLAT 244
            G  GHAVD F +  T+LG+ T+LG+G  Q+++GL +L+G+  S    + +II  + +AT
Sbjct: 191 KGAAGHAVDGFGMFVTLLGLVTNLGIGSLQVSSGLENLFGMEHSNTNLLIVIIVMSTVAT 250

Query: 245 VSVVTGLDKGVRRLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNL 304
           ++ V+G++ G+RRLS LN+ L + LL+ VL+ GPT+ +L  FVQN G YL+ +V KTF+L
Sbjct: 251 IAAVSGVENGIRRLSNLNIVLFSGLLIFVLLFGPTLHLLNGFVQNIGDYLNGVVLKTFDL 310

Query: 305 YAYEPND-----WIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFT 359
           Y YE +      W+G WTLFYW WW++W+PFVG+FIARISRGRT+RE VAGVLL+P  FT
Sbjct: 311 YVYEGDSEKSDRWLGLWTLFYWAWWISWAPFVGMFIARISRGRTVRELVAGVLLIPLGFT 370

Query: 360 LLWMTVFGDTAIHMILWEHVTSLGDAIEQDSSLALFAFLEHFPFSALISLIAIIMVVVFF 419
           L W+++FG++A+ +++      LG    +  S+A++  LEH+P S ++  ++I +  V F
Sbjct: 371 LAWLSIFGNSALDLVMNHGAVELGKTALEQPSMAIYQLLEHYPASKIVIGVSIFVGFVLF 430

Query: 420 VTSADSGALVVDMLASGG---KQGTPVWQRIFWAMSMGGVAIALLLADGLTALQTATIAS 476
           +T ADSGA+++  L+  G    +  P W RIFW+  +  V I LL A    A+QT  + +
Sbjct: 431 LTPADSGAVMMANLSCKGGNVDEDAPHWLRIFWSAVITLVTIGLLFAGNFEAMQTMVVLA 490

Query: 477 ALPFTIALLCSMWGLLKALRLDATKQGLRYQALSTSPSAPRTAGGWQRRLRTLMLFPRRA 536
            LPF++ L+  M+GL KA+R D   +         +  A R   G+  RL  L L P ++
Sbjct: 491 GLPFSVVLVFFMFGLHKAMRQDVQIE------QEQAELAARGRRGFSERLTQLDLQPNQS 544

Query: 537 HVVRFITEVVRPAYEDIAEEMRKQGYVVEISEGEDRR---LRFEITHDGEPDFIYEVRPR 593
            V RF+ + V PA ED A ++R QG  V+   G+ +R   +R E+  +G P F+YEV   
Sbjct: 545 IVQRFMDKRVSPALEDAAVQLRAQGLDVQTLLGKAKRCMGVRIEM-EEGNP-FVYEVSLD 602

Query: 594 AY-AMPSFVATSDDDEREERKYFRAEVHLKEGGQDYDVMGWSREDVISDILGQYEKHMHF 652
            Y A  S   +++  +    +Y+RAEV+L  G QDYD+MG++++ +  D+L Q+E H   
Sbjct: 603 GYLAAASDTVSAESADEPRARYYRAEVYLHNGSQDYDLMGFTQDQITRDVLDQFESHRQL 662

Query: 653 LHMV 656
           L  V
Sbjct: 663 LGRV 666