Pairwise Alignments

Query, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

Subject, 658 a.a., choline/carnitine/betaine transport (RefSeq) from Shewanella amazonensis SB2B

 Score =  714 bits (1842), Expect = 0.0
 Identities = 362/650 (55%), Positives = 456/650 (70%), Gaps = 13/650 (2%)

Query: 11  LNAPVFYGSAVIILALVIYSVAFQSHAQTLFGDTQAWIIANVSWLYILAVALILLMVVLL 70
           +N PVF+GS  +I  LV     +   AQ  FG  Q W+     WLY+L VA+ L+ +V +
Sbjct: 7   INRPVFFGSLFLITLLVALGAIWPQQAQQWFGAVQHWLEVKAGWLYVLGVAVFLVFIVFV 66

Query: 71  AFSRYGDIKLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLSPPTGEGGTT 130
             SR+GDIKLGPDH+EPDYS  +W AMLFSAGMGIGLMFFGVAEPVMH ++PP     + 
Sbjct: 67  MVSRFGDIKLGPDHAEPDYSYKSWIAMLFSAGMGIGLMFFGVAEPVMHLIAPPDATPESI 126

Query: 131 LAAREAMKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGERIYGPIGH 190
            AAR+AMKITFFHWG+HAW+IYA+VA+ LAYFAYRH LPL  RSALYPLIGERI+GPIGH
Sbjct: 127 EAARQAMKITFFHWGIHAWAIYAVVALSLAYFAYRHKLPLLPRSALYPLIGERIHGPIGH 186

Query: 191 AVDIFAIIGTVLGVATSLGLGVTQINTGLNHLYG--LPISVPVQIGLIIATTLLATVSVV 248
           AVD FA++GT+ GVATSLG GV Q+N GLN L+G   P+S P+Q+GLI   TL+ATVSV 
Sbjct: 187 AVDAFAVLGTMFGVATSLGFGVLQVNAGLNFLFGDQFPVSTPLQVGLIAVITLIATVSVF 246

Query: 249 TGLDKGVRRLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNLYAY- 307
           +GLDKGV+RLSELNL LA +L+L+VL+ GPTV +LQ  VQNTG+Y SDIV KTFNLYAY 
Sbjct: 247 SGLDKGVKRLSELNLLLAVVLMLVVLLVGPTVALLQAIVQNTGAYFSDIVGKTFNLYAYQ 306

Query: 308 EPNDWIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFTLLWMTVFG 367
           + NDW+GGWTL YWGWW++WSPFVG FIAR+SRGRTIREF+ GVL VP+ FT LWMTVFG
Sbjct: 307 QKNDWLGGWTLLYWGWWISWSPFVGTFIARVSRGRTIREFLLGVLFVPSGFTFLWMTVFG 366

Query: 368 DTAIHMILWEHVTSLGDAIEQDSSLALFAFLEHFPFSALISLIAIIMVVVFFVTSADSGA 427
           ++AI  IL +  T L DA+  D S+ALF F +  P ++L+S +A+ +VV FFVTS+DSG+
Sbjct: 367 NSAIDQILHQGNTVLADAVSSDVSVALFVFFQQLPLTSLLSAVALCLVVTFFVTSSDSGS 426

Query: 428 LVVDMLASGGKQGTPVWQRIFWAMSMGGVAIALLLADGLTALQTATIASALPFTIALLCS 487
           LV+D L SGG   +PVWQR+FWA+  G VA  LLLA GL ALQTA IASA+PF + +L  
Sbjct: 427 LVIDNLTSGGDMSSPVWQRVFWALMQGVVASVLLLAGGLQALQTAAIASAMPFLLVMLLI 486

Query: 488 MWGLLKALRLDATKQGLRYQALSTSPSAPRTAGGWQRRLRTLMLFPRRAHVVRFITEVVR 547
             GL KAL+ D  K     Q   TS         W+ RL+ L+  P       FI    R
Sbjct: 487 CLGLFKALQDDWLKLS-SVQLHHTSVQYASANVEWRERLKVLVNQPSAKDARAFIRGPAR 545

Query: 548 PAYEDIAEEMRKQGYVVEISEGEDRRLRFEITHDGEPDFIYEVRPRAYAMPSF--VATSD 605
            A + +A     +G    + + ED R+R  I  D  PDF+Y +R R Y+      V  +D
Sbjct: 546 QALKQVASAFVNEGIDARVVQQED-RVRLLIASDNHPDFVYGLRLRQYSKVPVHGVEETD 604

Query: 606 DDEREERKYFRAEVHLKEGGQDYDVMGWSREDVISDILGQYEKHMHFLHM 655
           DD      ++R EV L+ GGQ YDV+G++ E + +D + QYEK++H+LH+
Sbjct: 605 DD------FYRVEVFLEHGGQHYDVLGYTVEQLQADAVTQYEKYLHYLHL 648