Pairwise Alignments

Query, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

Subject, 523 a.a., choline/carnitine/betaine transporter (RefSeq) from Shewanella loihica PV-4

 Score =  426 bits (1096), Expect = e-123
 Identities = 224/493 (45%), Positives = 323/493 (65%), Gaps = 11/493 (2%)

Query: 14  PVFYGSAVIILALVIYSVAFQSHAQTLFGDTQAW-IIANVSWLYILAVALILLMVVLLAF 72
           PVF  SA +I A ++ ++   +       D   W II    WL+I +  + ++  + L  
Sbjct: 32  PVFGVSAGLIAAFLLATLLTDAETAKSVLDGIKWKIIGAFDWLFIWSGNIFVIFCLGLIL 91

Query: 73  SRYGDIKLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLS---PPTG-EGG 128
           S YG I+LG + +  DYS L+W +MLF+AGMGIGLMF+ VAEPV +F      P G E  
Sbjct: 92  SPYGKIRLGGNEATADYSFLSWLSMLFAAGMGIGLMFWSVAEPVAYFTGWYETPLGVEPN 151

Query: 129 TTLAAREAMKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGERIYGPI 188
           T  AA+ A+  T FHWGLH W+IY +VA+ LA+F Y  G+PL++RS  YPL+G+R +G  
Sbjct: 152 TPEAAKLALGATMFHWGLHPWAIYGVVALSLAFFTYNKGMPLSIRSIFYPLLGDRAWGWA 211

Query: 189 GHAVDIFAIIGTVLGVATSLGLGVTQINTGLNHLYGLPISVPVQIGLIIATTLLATVSVV 248
           GH VDI A++ T+ G+ATSLGLG  Q  +G++H++G+  S+ +Q+ +I+A TLLA VSVV
Sbjct: 212 GHIVDILAVLATLFGLATSLGLGAQQAASGIHHVFGIEASLGLQMIVIVAVTLLAVVSVV 271

Query: 249 TGLDKGVRRLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNLYAYE 308
            G+D GV+ +S +N+ +A LLL++V + G  V  L +      +Y+ +I+  + N +   
Sbjct: 272 RGIDGGVKVISNINMIVAFLLLILVAMIGYAV-SLGSIPTTLMAYVENIIPLS-NPHGRT 329

Query: 309 PNDWIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFTLLWMTVFGD 368
              W  GWT+FYW WW++WSPFVG+FIAR+S+GRT+REF+  VLLVPTA TL+WM+VFG 
Sbjct: 330 DEAWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTVREFITAVLLVPTAVTLIWMSVFGG 389

Query: 369 TAIHMILWEHVTSLGDAIEQDSSLALFAFLEHFPFSALISLIAIIMVVVFFVTSADSGAL 428
            AI  ++   V  LG     D  LA+F   +  PF  L+S+IA+++V+VFF+TS+DSG+L
Sbjct: 390 MAIDQVV-NKVGELGAKGLTDVPLAMFEMFDVLPFGTLLSIIAVVLVLVFFITSSDSGSL 448

Query: 429 VVDMLASGGKQGTPVWQRIFWAMSMGGVAIALLLADG---LTALQTATIASALPFTIALL 485
           V+D + +GGK   PV QR+FWA+  G +A+ALL   G   + ALQ   I++ALPFT+ LL
Sbjct: 449 VIDSITAGGKIDAPVPQRVFWALLEGAIAMALLWIGGTEAIQALQAGAISTALPFTVILL 508

Query: 486 CSMWGLLKALRLD 498
                LLK +R +
Sbjct: 509 LMCVSLLKGMRTE 521