Pairwise Alignments

Query, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

Subject, 524 a.a., choline/carnitine/betaine transporter (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  399 bits (1026), Expect = e-115
 Identities = 212/506 (41%), Positives = 310/506 (61%), Gaps = 25/506 (4%)

Query: 19  SAVIILALVIYSVAFQSHAQTLFGDTQAWIIANVSWLYILAVALILLMVVLLAFSRYGDI 78
           SA IIL  V+  +AF S +       +  I     W Y+L   + L+ ++ +AFS+YG I
Sbjct: 19  SAGIILLFVLLVLAFPSRSADWIDAARTLITFYFGWWYVLLSGVFLVFLIAIAFSKYGAI 78

Query: 79  KLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLS-PPTGEG-GTTLAAREA 136
           +LG     P YS  TWFAML++AG GIG++F+ +AEP+ H+    P  +G GT  AA  A
Sbjct: 79  RLGDADERPKYSYFTWFAMLYAAGQGIGIIFWSIAEPMFHYSGGTPFADGSGTAAAADMA 138

Query: 137 MKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGERIYGPIGHAVDIFA 196
           M++TFFHWGL+AW+IY IVA+ L   +YR   PL +R  LYPL G+R+ GP+G  +D+ A
Sbjct: 139 MQVTFFHWGLNAWAIYCIVALALCLVSYRLKKPLGIRYTLYPLFGDRVEGPLGVVIDVVA 198

Query: 197 IIGTVLGVATSLGLGVTQINTGLNHLYGLPISVPVQIGLIIATTLLATVSVVTGLDKGVR 256
           +  T+ G+ATSLGLGVTQIN GLNHL+G+PIS  VQ+ LI A T +A  SV++GLD+G++
Sbjct: 199 VFATIFGIATSLGLGVTQINAGLNHLWGVPISETVQLVLIAAITAVALCSVLSGLDRGIK 258

Query: 257 RLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNLYAYE-------- 308
            LS++N+ L   LL+     GPT ++L +  + T +Y   +   +FN+Y           
Sbjct: 259 WLSQVNMWLTIALLVFFFTWGPTQYLLVSLGEVTLAYFVSLF--SFNVYIESVPAEATRW 316

Query: 309 PNDWIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFTLLWMTVFGD 368
            + W G WT FYWGWW++W+PFVG+F+AR+SRGRT+REF+ GV+ V +  + +W+  +G 
Sbjct: 317 SDMWQGWWTTFYWGWWISWAPFVGVFVARVSRGRTVREFILGVVGVSSILSFVWIVAYGG 376

Query: 369 TAIHMILWEHVTSLG---DAIEQDSSLALFAFLEHFPFSAL---ISLIAIIMVVVFFVTS 422
           TA    LW  V   G   DA+  + S+ALFA  +     A+     +   I+V  +FVTS
Sbjct: 377 TA----LWAEVLGPGGVSDAVSANVSMALFATFDAMDVGAIGLVAGVFGTILVTTYFVTS 432

Query: 423 ADSGALVVDMLASGGKQGTPVWQRIFWAMSMGGVAIALLLADG---LTALQTATIASALP 479
           +DSG LVV  + S G +      R+ W    G VA  LL+  G   L+ LQTA I +ALP
Sbjct: 433 SDSGTLVVATILSEGNEHPMYRHRMIWGTFEGVVAAVLLVVGGSAALSTLQTAAIIAALP 492

Query: 480 FTIALLCSMWGLLKALRLDATKQGLR 505
           F++ ++   + +++ L L+  K+ +R
Sbjct: 493 FSVIMVLMCFAIIRCLALEHGKEAIR 518