Pairwise Alignments

Query, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

Subject, 658 a.a., choline/carnitine/betaine transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  711 bits (1835), Expect = 0.0
 Identities = 355/649 (54%), Positives = 462/649 (71%), Gaps = 6/649 (0%)

Query: 9   SHLNAPVFYGSAVIILALVIYSVAFQSHAQTLFGDTQAWIIANVSWLYILAVALILLMVV 68
           S +N PVFY S   I  +V+    + + A   F   Q+W+ A   WLYIL VA+ L+ ++
Sbjct: 5   SSINPPVFYSSVFFITLMVMICAIWPTEANHFFKSMQSWLEAKAGWLYILGVAIFLIFII 64

Query: 69  LLAFSRYGDIKLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLSPPTGEGG 128
            +  SR+GDIKLGPDH+ PDYS  +W AMLFSAGMGIGLMFFGVAEPVMH+L+PP     
Sbjct: 65  FVMVSRFGDIKLGPDHAVPDYSYKSWIAMLFSAGMGIGLMFFGVAEPVMHYLAPPDATPE 124

Query: 129 TTLAAREAMKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGERIYGPI 188
           +  AA+EAMKITFFHWG+HAW+IY +VA+ LAYFAYRH LPL  RSALYPLIGERI+GPI
Sbjct: 125 SLAAAKEAMKITFFHWGIHAWAIYGVVALSLAYFAYRHKLPLLPRSALYPLIGERIHGPI 184

Query: 189 GHAVDIFAIIGTVLGVATSLGLGVTQINTGLNHLY-GLPISVPVQIGLIIATTLLATVSV 247
           GH VD FA++GT+ GVATSLG GV Q+N+GL++L+  LP +  VQ+ LII  TLLAT+SV
Sbjct: 185 GHCVDTFAVLGTMFGVATSLGFGVLQVNSGLSYLFEQLPNNTTVQVSLIIGITLLATLSV 244

Query: 248 VTGLDKGVRRLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNLYAY 307
            +GLDKGV+RLSELNL LA +LLL+VL+ GPTV +LQ FVQNTGSYLSDIV+KTFNLYAY
Sbjct: 245 FSGLDKGVKRLSELNLGLALILLLIVLILGPTVMLLQAFVQNTGSYLSDIVNKTFNLYAY 304

Query: 308 E-PNDWIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFTLLWMTVF 366
           +   DW+GGWTL YWGWW++WSPFVG FIAR+SRGRTIREF+ G+L VP+A T LWMTVF
Sbjct: 305 QHKEDWLGGWTLLYWGWWISWSPFVGTFIARVSRGRTIREFLVGILFVPSALTFLWMTVF 364

Query: 367 GDTAIHMILWEHVTSLGDAIEQDSSLALFAFLEHFPFSALISLIAIIMVVVFFVTSADSG 426
           G++AI  I+ +  T L +A+  +  +ALF F EH PF  L+S I I +VV FFVTS+DSG
Sbjct: 365 GNSAIDAIMNQGATYLSEAVNTNVPVALFVFFEHMPFPHLLSGIGICLVVTFFVTSSDSG 424

Query: 427 ALVVDMLASGGKQGTPVWQRIFWAMSMGGVAIALLLADGLTALQTATIASALPFTIALLC 486
           +LV+D L SGG    PVWQR+FWA+  G VA  LLLA GL ALQTA IASA+PF   +L 
Sbjct: 425 SLVIDNLTSGGDNNAPVWQRVFWALLQGVVASVLLLAGGLQALQTAAIASAMPFLCVMLL 484

Query: 487 SMWGLLKALRLDATKQGLRYQALSTSPSAPRTAGGWQRRLRTLMLFPRRAHVVRFITEVV 546
              GL KAL+ D  K     Q  +TS    +T   W+ R+  L+  P       F+  V 
Sbjct: 485 MCLGLYKALKDDWLKIN-SVQLHTTSVQYAKTNISWEERIEVLVSHPTEDEARIFLNNVA 543

Query: 547 RPAYEDIAEEMRKQGYVVEISEGEDRRLRFEITHDGEPDFIYEVRPRAYAMPSFVATSDD 606
            PA   + ++   +G   ++ E  D ++R  I+++    F+Y VR R + + + V   ++
Sbjct: 544 TPALSKVCQQFMSKGLTADL-EYLDGKVRLVISNEAYQPFVYGVRMRCFEIVNPV--GEE 600

Query: 607 DEREERKYFRAEVHLKEGGQDYDVMGWSREDVISDILGQYEKHMHFLHM 655
            E+    Y+RAEV+L++GGQ YDVMG++ E +++D++ QYEK++H+LH+
Sbjct: 601 LEQGNNWYYRAEVYLEQGGQHYDVMGYTEEQLLADVVTQYEKYLHYLHL 649