Pairwise Alignments

Query, 323 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  103 bits (256), Expect = 8e-27
 Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 5/275 (1%)

Query: 37  YPTVVAMENLGKKLETATNGEIKSRMFAGGVLGSEKEVIEQTQIGAVQLTRVSLGSVGPV 96
           +P  +A   L K++    NG+   ++F    L  + +V+E    G VQL   SL      
Sbjct: 42  HPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKF 101

Query: 97  VPATNVFNMPFVFRDIDHMRKVVDGEIGQEILDAITNSDFNMVGLAWMEAGSRSLYTKKP 156
                +F++PF+F D+D + +      G+E+ +A+T     + GL +   G + +   KP
Sbjct: 102 TKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRR--GVKGLEFWHNGMKQISANKP 159

Query: 157 IRRIEDLKGMKIRVIGNPLFIDTLNAMGANGIAMDTGEIFSALQSGVIDGAENNSPTLLE 216
           I    D KG+K RV  + + +     +GAN   M   E +  LQ+ VIDG EN    +  
Sbjct: 160 ILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYG 219

Query: 217 HNHFRVAKHYTQTHHLILPEPLLMSKDTWNKLSPEQQATVKKLAKEAQLEER-DLWVAKE 275
             +F V    T+T+H IL   ++ S   W+ L  + +    K+  E  +E   +    +E
Sbjct: 220 QKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEE 279

Query: 276 TASNEKLKAEGV--EFIEVDTKPFYDATAPVREKY 308
                 ++A GV         + + DA  PV +K+
Sbjct: 280 LNKQYIIEAGGVVRTLTPEQRQQWVDALKPVWQKF 314