Pairwise Alignments

Query, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  308 bits (788), Expect = 3e-88
 Identities = 167/447 (37%), Positives = 267/447 (59%), Gaps = 25/447 (5%)

Query: 3   AVVLLGSFIV-LILLRVPVAYSLGLATLVGAWW-IDIPLHAVMIQIAGG-VNKFSLLAIP 59
           AV LL   ++ ++++ VP+A SLGL++++   W  D  L +V   +       ++LLAIP
Sbjct: 2   AVALLFILVIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAIP 61

Query: 60  FFVLAGAIMAEGGMARRLVAFAGVLVGFVRGGLSLVNITASTFFGAISGSSLADTASVGS 119
           FF+LA   M+ GG+A+R++ FA  +VG+ RGGL++ ++ A   F A+SGSS A   ++GS
Sbjct: 62  FFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIGS 121

Query: 120 VLIPEMEKKGYPREFSTAVTISGSVQALLTPPSHNSVIYSLAAGGTVSIAALFVAGIGPG 179
           ++I  M K GY +EF+  V  +     +L PPS   V+YS A    VS+  +F+ G+ PG
Sbjct: 122 IVIAGMVKNGYSKEFAAGVICNAGTLGILIPPSIVMVVYSAATN--VSVGRMFLGGVVPG 179

Query: 180 LLLSATMATLCLLFARKRNYPKGEVVPLRQALKICVEALWGLMTMVIILGGILSGVFTAT 239
           LL    +     + AR +N PK   V  ++ALK   EA WGL+ +VIILGGI  G+FT T
Sbjct: 180 LLAGLMLIIAIYITARIKNLPKQPFVGWKEALKAAKEASWGLLLVVIILGGIYGGIFTPT 239

Query: 240 ESAAVAVVWAFFVTMFIYRD--------------------YKWSELPRMLHRTVRTLSIV 279
           E+AAVA V++FF+  FIYRD                    +   +    L+   +   ++
Sbjct: 240 EAAAVAAVYSFFIANFIYRDMGPFADKTNTKPVLVKVVETFVHKDTKATLYDAGKLTIML 299

Query: 280 MILIAFAASFGYIMTLMQIPSKITTAFLALSDNRYVILMCINFMLLVLGTLMDMAPLILI 339
           M +IA A    +++T  +IP  IT + L+        L+ +N +LLV G  M+ + L++I
Sbjct: 300 MFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLILLVGGQFMEPSGLLVI 359

Query: 340 LTPILLPVVVSFGVDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAIGKVTIENTVKALLP 399
           + P++ P+ ++ G+DP+H G++M+VN+ IG+ITPPVG  LFV + + K+++ N VKA LP
Sbjct: 360 VAPLVFPIAIALGIDPIHLGIMMVVNMEIGMITPPVGLNLFVTSGVAKMSMMNVVKAALP 419

Query: 400 FYAALFAVLMAVTYIPMISLWLPSVVL 426
           +   +F  L+ VTY+P +S WLP++++
Sbjct: 420 WVGVMFLFLIIVTYVPWVSTWLPTLLM 446