Pairwise Alignments

Query, 805 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1046 a.a., sensor histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  113 bits (282), Expect = 6e-29
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 569  ELELDASRAQLRELAAHLETVREEEKAHIAREVHDELGQVLTVLKLETSMCELGFADLDP 628
            E  L ++   +R LA  L+  +EEE+  I+RE+HD+ GQ LT  ++   +    F    P
Sbjct: 823  EQHLKSAFEGMRNLATRLQYAKEEERKSISRELHDQFGQSLTATQISLQL----FRRQHP 878

Query: 629  ALAQRLESMKRLIAQLFQRVRDVATALRPPILD-AGIASAVEWQARRFEERSGVACLVEV 687
               + +++    I  + ++VR ++  LRP +LD  G+ + +  Q  +         +   
Sbjct: 879  GDPKLIDTCITTIQAMIKQVRAISFDLRPSLLDDVGLVAGLHHQLNKMSSSLTHPIIFNA 938

Query: 688  PECPPALGNAKAIGLFRILQESLTNVMRHARAQTVSVQLQLEGDLLCLRVSDDGCGFADA 747
                P L     I LFR++QES+TN +RHA A  + V+L  +GD +   VSD+G GF   
Sbjct: 939  DTDIPELSPELTITLFRVIQESVTNAIRHANATRIEVKLYPDGDKIKAEVSDNGVGFEPG 998

Query: 748  GRSA----GSSFGLVGMRERIQMLGGQLCIDSQPGEGTTITARVPLD 790
            G SA    G   GL+G+ ER++   G L I + P  G +I+   P +
Sbjct: 999  GISAKVSKGGHLGLLGIEERVKSQNGNLNIKAIPHGGVSISVEFPYE 1045