Pairwise Alignments

Query, 805 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 792 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  190 bits (483), Expect = 2e-52
 Identities = 133/376 (35%), Positives = 193/376 (51%), Gaps = 11/376 (2%)

Query: 423 LVVFLADITERRRASAQLQES---EARLKAMAGNVPGLVFRLERDGPQAPVRVAYISEAS 479
           LV    DIT RR+A   L++    + +L  +A +VPG+++ ++   P     + Y  + S
Sbjct: 407 LVTIHMDITARRQAEEGLRQRLMLQDKLARVAASVPGVIYSIKLR-PDGTFCIPYAMQGS 465

Query: 480 QRLVGYSAERL---LQPGQG-IRSLVHADDEAGYWASQQLALEKSQDWRWQGRILNRNGE 535
             + G   E L   L    G + S +H  D+    A    +      W  + R+ +  G 
Sbjct: 466 VDIFGLRPEDLTEDLTEDLGPVLSRIHGADQERVLAVVLESARTMAPWHCEFRVHHPQGG 525

Query: 536 VRWADIRASVRGQPDGRQVWDGIVWDITDNKRIELELDASRAQLRELAAHLETVREEEKA 595
           VRW + +A  R + DG  +W G + D++  K+ + EL  SR QLR L   L+ VREEE++
Sbjct: 526 VRWVESKAVPRLEDDGCVIWHGYIHDVSARKQADAELMRSRDQLRALNEGLQRVREEERS 585

Query: 596 HIAREVHDELGQVLTVLKLETSMCELGFADLDPALAQRLESMKRLIAQLFQRVRDVATAL 655
            I+ E+HD+LGQ LTVLKLE +               RL+ + RLI    + VR ++  L
Sbjct: 586 RISLEIHDQLGQSLTVLKLEMAWLRARLLGGQAEEKTRLQEVGRLIDDTLRAVRTISWDL 645

Query: 656 RPPILDA-GIASAVEWQARRFEERSGVACLVEVPECPPALGNAKAIGLFRILQESLTNVM 714
           RP ILD  G+ + VEW    F  R G+ C V VP     L +  A  LFRI QE LTNV 
Sbjct: 646 RPGILDTLGLGAGVEWLVDDFRRRLGIRCNVVVPRERLELPDVLATHLFRICQELLTNVA 705

Query: 715 RHARAQTVSVQLQLEGDLLCLRVSDDGCGFADAGRSAGSSFGLVGMRERIQMLGGQLCID 774
           RHA+A  + V L L    + L V D+G G      + G S GL+G++ER    GG++ I 
Sbjct: 706 RHAQANRIDVSLGLADGRVLLEVRDNGRGMPML-PAHGHSLGLLGIKERAAQCGGEVHIA 764

Query: 775 SQPG-EGTTITARVPL 789
           ++P  EGT +   VPL
Sbjct: 765 TRPEIEGTRVRVLVPL 780



 Score = 33.1 bits (74), Expect = 6e-05
 Identities = 20/66 (30%), Positives = 31/66 (46%)

Query: 400 RADGQRFPAAVTYSFLRFGSREYLVVFLADITERRRASAQLQESEARLKAMAGNVPGLVF 459
           R DGQ     ++   +   S  YL   L D+TE RR+ A    +E    A+  ++   V 
Sbjct: 252 RPDGQVRHLLISVDLVFLDSERYLQWTLLDVTENRRSQALASRNEILTNAIMNSLDVAVA 311

Query: 460 RLERDG 465
            L+R+G
Sbjct: 312 VLDREG 317



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 427 LADITERRRASAQLQESEARLKAMAGNVP-GLVFRLERDGPQAPVRVAYI 475
           L D+TER++    L+ESEAR   +    P G+      DG    V  A++
Sbjct: 154 LQDVTERKKVEIALRESEARFSTIFRTCPAGIALCRVADGSLVDVNPAFL 203