Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 20/234 (8%)

Query: 68  AMVDTNSVSWNLVEVESPELSRGCDEGLFEELDPSIVGN----SDDFVEGAIQP---CGV 120
           A + T++  ++LV   +  +++  DEG+ +++D S + N      ++++    P     +
Sbjct: 67  AKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDKPYDPNNDYSI 126

Query: 121 GFFVWSTVLAYNADKLKSAP-ASWADFWDTEKFPGKRGLRKGAKYTLEFALMADGVPVKD 179
              V  T LA N D        SW D W  E   G+  L    +     AL   G     
Sbjct: 127 PHVVAITGLAVNTDMYDPNDFQSWGDLWKPE-LKGQLMLMDDTREVFHIALRKLG----- 180

Query: 180 VYKVLATKDGQ-NRAFRKLDQLKPNIQWWEAGAQPPQFLASGDVVMSSAYNGRIAAVQNE 238
            Y   +T D Q + A+ +L +L PN+  + +      +L SG+V +   +NG  AA Q E
Sbjct: 181 -YSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYL-SGEVGLGMLWNGSAAAAQKE 238

Query: 239 S---NLQIVWSGGIYDFDSWAIPKGAKSQEQARKFIAFTVEPQQQKAYAENIAY 289
                L     GGI   D++AI  GAK+ + A K I F + P+  +  + +  Y
Sbjct: 239 GLPIKLVFPKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY 292