Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 73/264 (27%), Positives = 121/264 (45%), Gaps = 23/264 (8%)

Query: 68  AMVDTNSVSWNLVEVESPELSRGCDEGLFEELDPSIVGNSDDFVEGAI-QPCGVGF---- 122
           A + T    ++LV   +  +S+   EG+ +E+D S + +  D     + +P   G     
Sbjct: 65  AKLKTQGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLNKPFDPGNKFSI 124

Query: 123 -FVW-STVLAYNADKL-KSAPASWADFWDTEKFPGKRGLRKGAKYTLEFALMADGVPVKD 179
            ++W +T +  N D L K +  +W D WD  K+ G+  L   A+     AL   G     
Sbjct: 125 PYIWGATGIGINTDMLDKKSLKNWGDLWDA-KWAGQLMLMDDAREVFHIALSKLG----- 178

Query: 180 VYKVLATKDGQNRA-FRKLDQLKPNIQWWEAGAQPPQFLASGDVVMSSAYNGRIAAVQNE 238
            Y    T   + +A +R+L +L PN+  + +      +LA G+V +   +NG     + E
Sbjct: 179 -YSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLA-GEVSLGMLWNGSAYMARQE 236

Query: 239 -SNLQIVW--SGGIYDFDSWAIPKGAKSQEQARKFIAFTVEPQQQKAYAENIAYGPANTQ 295
            + +QI+W   G I+  DS +IP GAK+ E A K I F + P+     A  I Y P   +
Sbjct: 237 GAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGY-PTPVK 295

Query: 296 AVSLLDEKRLAQMPT--APENIAD 317
               L  K  A  P+   P+++ D
Sbjct: 296 TAHDLLPKEFANDPSIYPPQSVID 319