Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Pseudomonas stutzeri RCH2

Subject, 357 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  119 bits (298), Expect = 1e-31
 Identities = 102/346 (29%), Positives = 162/346 (46%), Gaps = 22/346 (6%)

Query: 7   LSALALGLVCAGQATANSLTAVSFGGANKQAQVKAFYQPW-EAAGHGRIVAGEYNGEM-A 64
           LS L + L   G   A  +   S GGA  +A  +A++ P+ +A G   +     N EM A
Sbjct: 20  LSLLPISLPALG---AEKVIIASTGGAYDKALREAWFDPFTKATGIEVVTVAATNSEMRA 76

Query: 65  KVKAMVDTNSVSWNLVEVESPELSRGCDEGLFEELDPSI--VGNSDDFVEGAIQPCGVGF 122
           K  AMV T +V+W+L      + +      + E+L        + +D    A    G   
Sbjct: 77  KAAAMVKTGNVNWDLYLDGEIQAASKAHRKVTEDLTEFCRQFADREDLSVNACSAGGALL 136

Query: 123 FVWSTVLAYNADKL-KSAPASWADFWDTEKFPGKRGLRK--GAKYTLEFALMADGVPVKD 179
              +T+LAY   K   S PA+WAD WDT KFPG+R           +  AL+ADGV   +
Sbjct: 137 QSTATLLAYRTGKHGDSVPATWADMWDTRKFPGERAFPNFDDPWRVMAAALLADGVTRDE 196

Query: 180 VYKVLATKDGQNRAFRKLDQLKPNIQ-WWEAGAQPPQFLASGDVVMSSAYNGRIAAVQNE 238
           ++ +       +RA  KLDQ+KP++  WW+ G Q  Q   +G+  +   +  R  A+Q+E
Sbjct: 197 LFPL-----DIDRALAKLDQIKPSVSLWWKTGDQSVQGFRNGEYSLGQIWLTRAKAMQSE 251

Query: 239 SNLQIVWS--GGIYDFDSWAIPKGAKSQEQARKFIAFTV-EPQQQKAYAENIAYGPANTQ 295
             L I WS        D  A+ KGA  ++ A K I F +  P  Q    E ++  P ++ 
Sbjct: 252 -GLPIAWSYKAAFLVGDRIALLKGAPHRDNALKLITFWLNSPAAQAKACEVLSCTPPSSD 310

Query: 296 AVSLLDEKRLAQMPTAPENIADQVAMDVTFWAD-YGEQLEQRFNAW 340
           A++++ ++    MP   +++ D V +    W +     + QR+N W
Sbjct: 311 AIAMMSDEARKTMPQG-DDVRDYVIIPDAEWINANAAMMLQRWNEW 355