Pairwise Alignments

Query, 1399 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Pseudomonas stutzeri RCH2

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

 Score = 2059 bits (5334), Expect = 0.0
 Identities = 1027/1396 (73%), Positives = 1189/1396 (85%), Gaps = 2/1396 (0%)

Query: 1    MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MKDLLN LK Q + EEFDAIKI LASP+MIRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEV   KVRR+RM HIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180
            PSRIGLL+DM LRDIERVLYFE YVV +PGMT LE+GQ+L +E+Y + LEE+GD+F A+M
Sbjct: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180

Query: 181  GAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFYGSGNLPEWMILT 240
            GAEA+++LL  +DL  E  ++REE+  TNSETK KKL+KRLKL+EAF  SGN PEWMILT
Sbjct: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L+APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300

Query: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+ KLE RG+ATTIKAAKKMVERE   VWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYMTRE INAKGEG       E ++ +R  
Sbjct: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540

Query: 541  EASLHARVKVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPDGMAYDVVNQPMKKKA 600
             A LHARVKVRI E IK  +G +T  T+++DTTVGRA+L+QIVP G+ Y +VNQ + KK 
Sbjct: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600

Query: 601  ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE 660
            IS L+N  YR +GLKDTVIFADQ+MYTGFAY+ +SGVS+G++D V+P  K   I  A EE
Sbjct: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660

Query: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGKEAEQDSFN 720
            V+EI+ Q+ SGLVT GE+YNKVID+W+  ND V+KAMM NLS E+VI+R G++ +Q+SFN
Sbjct: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720

Query: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780
            S+YMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLFMTPHIEGGDVVEPLGERVL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVTE DCGT +G+ MTPHIEGGDV   L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840

Query: 841  GRVIARDVLKPGTDDVLVPAGTLVDEQWVDFIELNSIDEVVVRSPISCETRYGICAKCYG 900
            GRV++ D+LKPGTD+VL+P  TL+DE+W   I  NS+D++ VRS ++C++ +G CA+CYG
Sbjct: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900

Query: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVMVKNGGTIRL 960
            RDLARGH VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS  +A +++  KN G+++L
Sbjct: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960

Query: 961  HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKW 1020
            HN K V   DG LV  SR+ EL + D+FGR +E++KLPYG+++S  +GD V AG  VA W
Sbjct: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020

Query: 1021 DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPASGKDIRPAIKM 1080
            + HT PI+TE+ G V FV M + +T+ RQTD+LTGL++ EV +   RPA+GKD+RPAIK+
Sbjct: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080

Query: 1081 VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR 1140
            VDANGK++L+PGTD+PAQYFLP  A+V + DGAE+NVGD +ARIPQ++   +DITGGLPR
Sbjct: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140

Query: 1141 VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE 1200
            VADLFEAR+PKEP+ILAE SGT+SFGKETKGKRRL+IT  D  D YEE+IPK R LNVFE
Sbjct: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLNVFE 1199

Query: 1201 GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260
            GE++ +G+VI+DGP +PHDILRL G+ A+  YI NE+Q+VYRLQGVKINDKHIETI+RQM
Sbjct: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259

Query: 1261 LRKVEITESGDSSFIKGDQMELTQVLEENERLSEEDKFVAKYVRVLLGITKASLSTESFI 1320
            LRK  IT +GDS F+ G+ +E +QV   N +L EE K  A++ R LLGITKASL+TESFI
Sbjct: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319

Query: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR 1380
            SAASFQETTRVLTEAAV+GKRD LRGLKENV+VGRLIPAGTG AYH +R+ KR A +   
Sbjct: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKR-AQEQQG 1378

Query: 1381 VSADEVEAALTEALNS 1396
             SA++    L   LN+
Sbjct: 1379 PSAEQATDNLAALLNA 1394