Pairwise Alignments

Query, 1399 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Pseudomonas stutzeri RCH2

Subject, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

 Score =  228 bits (582), Expect = 2e-63
 Identities = 236/915 (25%), Positives = 393/915 (42%), Gaps = 152/915 (16%)

Query: 15  EEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGK 74
           +E   I   L SPE IR+ S  ++   +T +   + P   GL   ++ G +         
Sbjct: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58

Query: 75  YKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLLD----M 130
                  G++C+ C   V           HIEL+ PV HI F K +   +  +      +
Sbjct: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108

Query: 131 TLRDIERVLYFESYVVI-----DP-------------GMTTLEKGQLLNDEQYFE--ALE 170
           T+ +I+R  Y E    +     DP             G      G++  D +Y +  A  
Sbjct: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168

Query: 171 EFGDDFDARMGAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFYGS 230
           +       ++ +  VRE+L             E+IP  +     K L    K+       
Sbjct: 169 QLDGKAQKQLTSSEVREIL-------------EKIPAEDC----KLLGINAKVAR----- 206

Query: 231 GNLPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDI 290
              PE+M+LTVLPV P  +RP + L+ G  +  DL      +I  N RL+  ++  AP++
Sbjct: 207 ---PEFMVLTVLPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNL 263

Query: 291 IVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349
           I+ +   +LQ  ++   DN   G       + RPL++LA  +KGK+GRFR NL GKRV++
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323

Query: 350 SGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIK-----------AAK 398
           S R+VI+  P L +++ G+PK +A EL  P       +  +   ++             K
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVK 383

Query: 399 KMVERELPE------VWDVLAE----------VIREH-----PVLLNRAPTLHRLGIQAF 437
           K+  ++  E      + D   +          VI  H      VL NR P+LHR+ I A 
Sbjct: 384 KVRTKDGKEEEYKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAH 443

Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497
           +  ++  +  + +  VC  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G 
Sbjct: 444 KVKVLPYRTFRHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGG 503

Query: 498 PIIVPSQDVVLGLYYMTR------EAINAKGEGRVFADLQEVDRV-----FRAGEA---- 542
           PII    D + G Y +T       EA+       +  +L E D +     + +G++    
Sbjct: 504 PIIGAIHDFISGAYVLTSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSK 563

Query: 543 SLHARVKVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPDG-MAYDVVNQPMKKKAI 601
           +L   + ++    I  +  + TK     D  V       ++ +G +   V+++       
Sbjct: 564 TLPEGLSLQYRAKICKKCDTCTKEECEHDAYV-------VIRNGKLLRGVIDKNGFGSEA 616

Query: 602 SKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAR----IIDAA 657
             ++N   +  G +D  +F D           + G + G++D  IP E  +    +++ A
Sbjct: 617 GIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKA 676

Query: 658 TEEVKEIESQYASGLV-------TQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRD 710
            ++V++I  +Y +G +        +  +   ++ +  KA D+        LSKE      
Sbjct: 677 EQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALM 736

Query: 711 GKEAEQDSFNSMYMMADSGARGSAAQIRQLAGMR----------GLMAKPDGSIIETPIT 760
            +   + S  ++ MMA S  + S    R   G R           L AK  G      + 
Sbjct: 737 ARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF-----VR 791

Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGL 820
           + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD +  E D       
Sbjct: 792 SCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD-IRAEYDGTVRDSR 850

Query: 821 FMTPHIE-GGDVVEP 834
            +    E G D+V+P
Sbjct: 851 GLVVQFEYGEDLVDP 865