Pairwise Alignments

Query, 1399 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Pseudomonas stutzeri RCH2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Klebsiella michiganensis M5al

 Score = 2097 bits (5434), Expect = 0.0
 Identities = 1055/1399 (75%), Positives = 1190/1399 (85%), Gaps = 3/1399 (0%)

Query: 1    MKDLLNLLKNQGQIEEFDAIKIALASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MKDLL  LK Q + EEFDAIKIALASP+MIRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEV   KVRRERM HIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180
            PSRIGLLLDM LRDIERVLYFESYVVI+ GMT LE+ Q+L +EQY +ALEEFGD+FDA+M
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAVRELLIQIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFYGSGNLPEWMILT 240
            GAEA++ LL  +DLE E   LREE+ +TNSETK KKL+KR+KL+EAF  SGN PEWMILT
Sbjct: 181  GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL+APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGMATTIKAAKKMVERELPEVWDVLAEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+GKLE+RG+ATTIKAAKKMVERE   VWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540
            RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR+ +NAKGEG V    +E +R++RAG
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 541  EASLHARVKVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPDGMAYDVVNQPMKKKA 600
             ASLHARVKVRI E  KD +G     T + DTTVGRA+L+ IVP G+ + +VNQ + KKA
Sbjct: 541  LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA 600

Query: 601  ISKLINLCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE 660
            ISK++N CYR +GLK TVIFADQ MYTGFAY+  SG S+G++D VIP++K  II  A  E
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE 660

Query: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRDGKEAEQDSFN 720
            V EI+ Q+ SGLVT GE+YNKVID+W+ AND VSKAMM NL  E VI+R+G+E +Q SFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN 720

Query: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780
            S+YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEQGLFMTPHIEGGDVVEPLGERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLVVTE DCGT +G+ MTP IEGGDV EPL +RVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL 840

Query: 841  GRVIARDVLKPGTDDVLVPAGTLVDEQWVDFIELNSIDEVVVRSPISCETRYGICAKCYG 900
            GRV A DVLKPGT D+LVP  TL+ E W D +E NS+D V VRS +SC+T +G+CA CYG
Sbjct: 841  GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG 900

Query: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAVDNVMVKNGGTIRL 960
            RDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAASR +A  ++ VKN G+IRL
Sbjct: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL 960

Query: 961  HNLKHVERADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEGDKVDAGAVVAKW 1020
             N K V  + G LV  SR+ EL + D+FGR +E YK+PYG+V++  +G++V  G  VA W
Sbjct: 961  SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW 1020

Query: 1021 DPHTHPIVTEMKGVVTFVGMEENITIKRQTDELTGLTNIEVMDPKDRPASGKDIRPAIKM 1080
            DPHT P++TE+ G V F  M +  TI RQTDELTGL+++ V+D  +R   GKD+RPA+K+
Sbjct: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI 1080

Query: 1081 VDANGKELLLPGTDVPAQYFLPANALVGVADGAEINVGDVIARIPQETSKTRDITGGLPR 1140
            VDA G ++L+PGTD+PAQYFLP  A+V + DG +I+ GD +AR+PQE+  T+DITGGLPR
Sbjct: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE 1200
            VADLFEARRPKEP+ILAEISG ISFGKETKGKRRLVITP DGSDPYEE+IPKWR LNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200

Query: 1201 GEQVNKGEVISDGPSNPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260
            GE+V +G+V+SDGP  PHDILRL GV A+ +YIVNE+QDVYRLQGVKINDKHIE I+RQM
Sbjct: 1201 GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260

Query: 1261 LRKVEITESGDSSFIKGDQMELTQVLEENERLSEEDKFVAKYVRVLLGITKASLSTESFI 1320
            LRK  I  +G S F++G+Q+E ++V   N  L    K  A + R LLGITKASL+TESFI
Sbjct: 1261 LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFARDLLGITKASLATESFI 1320

Query: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADK--- 1377
            SAASFQETTRVLTEAAV GKRD LRGLKENV+VGRLIPAGTG AYH +R R+R A +   
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA 1380

Query: 1378 PVRVSADEVEAALTEALNS 1396
              +VS +E  A L E LN+
Sbjct: 1381 APQVSVEEASANLAELLNA 1399