Pairwise Alignments

Query, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (511), Expect = 6e-56
 Identities = 157/565 (27%), Positives = 276/565 (48%), Gaps = 43/565 (7%)

Query: 1   MLKNFSLTAKLSL---VPAVALFGLVLYVGYTSLQ----LSATDSRLVFLENRGYPTLEK 53
           ++  FSL   L++   +PA+AL    L+V +TSL     + A  + L    N   P    
Sbjct: 2   IINKFSLKWMLAIAVAIPAIAL----LFVAFTSLNTMSVMQAQSNSLY--ANTAAPMRAM 55

Query: 54  ADAVIFQFSRVPAL-LNNAVAAGEPGVLDEAREVLQQIDTQQQSLAALLSDQRQQHQALG 112
           A+A     SR+P + +   +   +   L +A+ VL++++   ++    + + RQ  Q   
Sbjct: 56  AEAT----SRIPRMRVGIDMMLLQETALKDAKGVLKRVE---EARTEDIPEMRQAMQVAV 108

Query: 113 DWRKS--VRDYADNALAASTKLIDGSASFDDLRPSLDRMAS-DLAQAQKLGSDFRAQAY- 168
           D + +  +++ A    A   +++      ++L P L   A+ D+  AQ +  D  A  Y 
Sbjct: 109 DSQVNPELKEQARKLQARFEQMVR-----EELEPMLQAFANNDMTTAQNIYRDKYAPTYG 163

Query: 169 ----------DSFQQTLVETREANANTTRLGIILSLVLVILVSLGAWLVIRSVMVNIRGV 218
                     D+  Q   +   A+  +   G    +V++    + +++    ++ N+R  
Sbjct: 164 EMRKQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSR 223

Query: 219 IASLQ---SIARGDGDLTQRVNVESNDEIGAMIELFNSFLDKLQSTIRQIIDAATPLGQV 275
           +A L+   S A  +  L  R+ ++ NDE+  + + FN+F+DK+  +I ++ + +  L  +
Sbjct: 224 VAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATM 283

Query: 276 SKELYKLTQGSEENAKSQQHHTDSITRDILTMTGSIQEVAQRSQQASDEANSAARQAATA 335
           +  + +    ++ N  SQ+  T  +   I  +  ++ E+A  +  A+D A  A   +   
Sbjct: 284 ASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEG 343

Query: 336 REHVGSLSTGISDLGDSVMGAVKAMEQLEEETQEVGSVLTVIRSIAEQTNLLALNAAIEA 395
           ++ VG +   I  L + +  A + +  L  +   + S L  IRSI+EQTNLLALNAAIEA
Sbjct: 344 KKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEA 403

Query: 396 ARAGEQGRGFAVVADEVRNLAQKTAASTAEIQQIIQRLQNSANTVLNVMTSNGEKSRASI 455
           ARAGEQGRGFAVVADEVR LA ++AAST EIQQ+I RLQ  +   +  M     +S   +
Sbjct: 404 ARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVV 463

Query: 456 QRSIEATQLLETIARTVNQIDELNAGIAQFTQEQIGLSSSIQQETQVLQQDAQATANGAE 515
           + S +A Q L  I   ++QI++ N  +A  T+EQ  +   I +  + + Q    T++ A+
Sbjct: 464 EFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVEDINRNVEDINQLTTETSHVAD 523

Query: 516 ATARLGEQLVSTGDHLRAATGQFRV 540
             +R    L      L    G F +
Sbjct: 524 ELSRASASLQRLSSQLDKLVGSFEL 548