Pairwise Alignments

Query, 644 a.a., Predicted signal-transduction protein containing cAMP-binding and CBS domains from Pseudomonas stutzeri RCH2

Subject, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  237 bits (604), Expect = 1e-66
 Identities = 169/625 (27%), Positives = 294/625 (47%), Gaps = 23/625 (3%)

Query: 23  MEFLRKYAPFNQMEPAHLTFLVENCELRFYAEGDCIISPDDGVVQHFYIVKQGRVHGQRP 82
           ++FL   APF+      +    +   + +Y++    +   D      Y+V+ G    + P
Sbjct: 10  VQFLTSTAPFDTFSEEFIRRCAKAVIIGYYSKASGFVQ-FDAEAPKLYLVRSGAFEVRDP 68

Query: 83  HTAKRGTDTTFEVIVGECFPMAALMGERATRTAHLAAEDTFCFLLNKPAFVKLVSSSPVF 142
                       V  GE F  + L+            ED+  +   +  F +L S S  F
Sbjct: 69  EGVLLD-----RVAEGEFFGFSTLLSGEKVVNRVAILEDSLVYHFPQALFDQLRSESRHF 123

Query: 143 RDFAMRGVSSLLDLVNQQAQMRAVESLGEQYSLETSIGELALHHPVSCLPSRPLNEAVAM 202
             F  R  +  L     +A+ +A     +  +  + I  L    P++      + +A  +
Sbjct: 124 DKFFTRAFAKRL---RHEARFKA-----KDLATTSRISTLMSSSPITIDAHATVTQAALL 175

Query: 203 MQQENVGSIVIVDEALHPQGIFTLRDLRRAIGTGTTDLSQPISQFMTHDPFYLPPDATAF 262
           M+   V S+++ D      GI T +DLR  +     D    + Q MT  P  +  +A  F
Sbjct: 176 MRNSRVSSLLVTDNH-KLVGILTDKDLRNRVLASGLDGQIAVHQAMTTSPISISSNALIF 234

Query: 263 DAAIAMTERHIAHVCVVENGLLQ-----GVISERDLFSLQRVDLVHLAQTIRHADRVDAL 317
           +A + M+E +I H+ +++          G+++  D+   Q    + L   I     + +L
Sbjct: 235 EAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIERQRDLASL 294

Query: 318 VVIRSRIAQLVDNMLAHGASSTQITHIVTLLNDHTVCRVIELAIEHMGDPGVPFTWLCFG 377
           + +  +I  L+ N+++  A + +I  ++T + D    R+I L  + +G+  + F WL FG
Sbjct: 295 ISVSKQIPVLLQNLISADARAEEIGRVLTSVTDALTRRLIVLNQQILGEAPMAFCWLTFG 354

Query: 378 SEGRQEQTLYTDQDNGILFEAADAAEAAHIRGRLLPLAERINRDLDTCGFSLCKGNIMAS 437
           S+GRQ+Q   +DQDNG+L  A +  + A  +G    L   +   LD CG+  C GNIMA 
Sbjct: 355 SQGRQDQAACSDQDNGLLV-AEEMDDFA--KGYFDALTHAVCAGLDQCGYMFCPGNIMAQ 411

Query: 438 NPQLCLSRQEWSRRFSSFVREATPENLLGSTIYFDLRSIWGPSEGCEQLRRDLLDEIKGN 497
           NP+  +S  +W + F  +V    P+ L+ ++I+FD+RS++GP    + L+  +L + K N
Sbjct: 412 NPKWRMSLNQWQKVFEKWVITPEPKALMHASIFFDMRSVYGPQSLFDALQDKVLAQTKDN 471

Query: 498 SLFQRMMADNALRHRPPVGRFRDFVVARKGEGKDTLDLKVQGLTPFVDGARLLALSNDIG 557
            +F   MA N+L   PP+G FR FV+ R G     +DLK +G     D AR+ ALS  I 
Sbjct: 472 DIFLAGMAGNSLIESPPLGFFRKFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIR 531

Query: 558 TCNTLERLRKLVEKGVIEKKDGAAYEEAYHFIQQTRMQHHQQQARDELPYSNRLDPDTLN 617
             NT +R+R L++  ++ +KD     +A+ FI   R+ +   Q    L  SN L P  L+
Sbjct: 532 EVNTAKRIRALMDANILNRKDALNLADAHEFIAHMRLSNQGYQHTQGLKISNYLLPGHLS 591

Query: 618 VLDRRILRESFRQAQRLQASLAVRY 642
            L R  LR++F+     Q+ + +++
Sbjct: 592 SLVRHQLRDAFKVVHDAQSGMKMKF 616