Pairwise Alignments

Query, 235 a.a., DNA polymerase III, alpha subunit (gram-positive type) from Pseudomonas stutzeri RCH2

Subject, 235 a.a., 3'-5' exonuclease from Pseudomonas fluorescens SBW25-INTG

 Score =  243 bits (621), Expect = 2e-69
 Identities = 128/232 (55%), Positives = 165/232 (71%), Gaps = 2/232 (0%)

Query: 1   MSMF-WFNSRGPKLPPEQQQRIDELPLPLAPQTVPLRQQRLVVLDLETTGLHLKRDLVIA 59
           MS+F W   + P L   QQ+R+++LP P A     LR QR VVLDLET+GL+L RD V++
Sbjct: 1   MSLFGWLRKKKPGLDAAQQRRLEQLPKPAALGDGSLRSQRWVVLDLETSGLNLNRDQVLS 60

Query: 60  IGAVVIEDGAIDYSQQFECTLCR-QVKVTESVLIHGIAPSELANGLPPAEALLSFMEFAA 118
           IGAVVIEDGA+D+SQ FE TL R + K++ SVLIHG+ PS +A G  P EALL FM F  
Sbjct: 61  IGAVVIEDGAVDFSQLFERTLQRAETKLSPSVLIHGLGPSAIAAGSDPVEALLDFMAFVG 120

Query: 119 GSVILAFHAPFDQRMLGRALKRELGYTMDHTFLDVADLAPMLFPEAMIHRGGLDHWLDYF 178
            S +LAFHAPFDQ ML RALK  LGY + H FLDVAD+AP+L P+A I   GLD W+++F
Sbjct: 121 DSPLLAFHAPFDQHMLCRALKDSLGYRLAHPFLDVADIAPLLCPQAHIREAGLDDWINHF 180

Query: 179 NIHIPQRHNASADAMATAEIALILLHRAQRVGLTSLDELAQRLRCWQRARKA 230
           N+H+ +RH+ASADA+ATAE+ LIL  RA+   + +   L +RL  W+R + A
Sbjct: 181 NLHVGERHHASADALATAELMLILFSRARAQHIDTPQALQERLSQWKRRQHA 232