Pairwise Alignments

Query, 235 a.a., DNA polymerase III, alpha subunit (gram-positive type) from Pseudomonas stutzeri RCH2

Subject, 204 a.a., DNA polymerase III, epsilon subunit (RefSeq) from Shewanella loihica PV-4

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 35  LRQQRLVVLDLETTGLH-LKRDLVIAIGAVVIEDGAIDYSQQFECTLCRQVKVTESVLIH 93
           + Q  +VVLD ETTGL  L+ D  I IGAV ++ G +    +F+  +     V+  +  +
Sbjct: 1   MSQDAIVVLDFETTGLSPLQGDRAIEIGAVKLQQGVV--VDRFQQLMNPGFAVSSFIADY 58

Query: 94  GIAPSELANGLPPAEALLS-FMEFAAGSVILAFHAPFDQRMLGRALKRELGYTMDHTFLD 152
               + + +  P  E +++ F +F  G  ++A +A FDQ+ L     R +       F  
Sbjct: 59  TGITNAMLSDAPSCETVMADFADFIQGCHLVAHNASFDQKFLTAEFAR-IDLEQSQPFAC 117

Query: 153 VADLAPMLFPEAMIHR-GGLDHWLDYFNIHIPQRHNASADAMATAEIALIL 202
              LA  LF     H+ G L ++L   N  +   H A  DA  T  + L L
Sbjct: 118 SLLLARRLFQAVPNHQLGTLVNYLGIANDGV--FHRALNDAEVTGALWLAL 166